Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04125 ATGTTGTTCAACGTCAAAGAAAACCGCACACTATACACACAAAAACACAAAACATTATCACTCCCAAATCTCAATTGCCCCATTTTCTTACCCTTTACACACAACTTTCCAAAACACTTCACAAGTTTTTCAAGAAAGATGGCAAATTGGTGGAGCGGAAATGGAAGACAGACGGAGGTGAACCCGATTGAAGGTTCGAATCAGAATGCTGGTTCGAATTTTATCGGGTTACGAAGAGACCAAGACTTTGAAAACAACATCGGCAACGTTACTCCAACTCCAACGTTGAGTAACAACAGCAACACAAACACCGTTAACATTAACGGTAACGTGAACGGAGAAGCTGAAAACAGCAGTGGCCGTGTGAGCAGCGGACAGAACACCGGAAGTGGCGGACGTCGTCCACGTGGACGTCCGCCCGGATCAAAAAACAAACCAAAACCGCCGGTGGTGATAACGAAAGAAACTCCAAACGCGCTGCGCAGCTTCATCTTGGAAGTTGCTGACGGAAACGACATCTCATCGTGTGTTTCCAATTTCGCGAATGTTCGCCACCGTGGTGTTTCGATTCTCAGCGGTACCGGCACTGTTAGCAATGTCACTCTCCGGAACCCGTCTGCTCCAACTGGAATGATTGTTCTTCATGGGAGGTATGAGCTTGTTTCACTCACTGGTGCTTTTTTGCCTCCGCCGTCGCCTCCGTCGGCTACCGGACTGGTTGCTTATCTTATCGGAGGTCATGGGCAGATAATCGGAGGATCGGTTGTCGGGAATTTGGTTGCTTGTGGACCTGTCATGATCATTGCTGCCACTTTTGCTAATGCTACTTATGAAAGATTACCATTAGCTTTGGATGAGGCACAAGAAGAAAATGAGCAAGAGATTAACAACACTAATCATGTTATTAATAACACTAATCATGTTATTAATAATACCATTGGTGTTATTAACAATGATGGTGGTTCTGGTTCCGGTGCTTCTGGCTCAGCTAGTGGTAGCGGCGGCGGTGGTGGCGCAACTTCTCATATTGGATTAGCTGATTACAATTTGAATCCAAGTTTGCTGCAGAATGGTGGTGGTGGACACACCGTGGCACATGATGTGTTCTGGCGTCCACCTCCTGGTTTTTGA 1131 0.4642 MLFNVKENRTLYTQKHKTLSLPNLNCPIFLPFTHNFPKHFTSFSRKMANWWSGNGRQTEVNPIEGSNQNAGSNFIGLRRDQDFENNIGNVTPTPTLSNNSNTNTVNINGNVNGEAENSSGRVSSGQNTGSGGRRPRGRPPGSKNKPKPPVVITKETPNALRSFILEVADGNDISSCVSNFANVRHRGVSILSGTGTVSNVTLRNPSAPTGMIVLHGRYELVSLTGAFLPPPSPPSATGLVAYLIGGHGQIIGGSVVGNLVACGPVMIIAATFANATYERLPLALDEAQEENEQEINNTNHVINNTNHVINNTIGVINNDGGSGSGASGSASGSGGGGGATSHIGLADYNLNPSLLQNGGGGHTVAHDVFWRPPPGF 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04125 376 Coils Coil 284 304 - -
Trre10g04125 376 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 102 371 IPR014476 GO:0003680
Trre10g04125 376 MobiDBLite consensus disorder prediction 85 152 - -
Trre10g04125 376 Gene3D - 160 299 - -
Trre10g04125 376 MobiDBLite consensus disorder prediction 85 131 - -
Trre10g04125 376 CDD DUF296 161 236 IPR005175 -
Trre10g04125 376 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 273 IPR005175 -
Trre10g04125 376 ProSiteProfiles PPC domain profile profile. 157 296 IPR005175 -
Trre10g04125 376 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04125 Trre-Chr10 50552857 50555672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04125 133 286 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 62.338 4.10e-57 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04125 - - cam:101507777 306.605