Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04123 ATGACAGGGTTTGGCTCATCATGTGGAGCATGCAAATTCTTAAGGAGAAAGTGTGCTAGTGATTGTGTATTTGCTCCTTACTTCTCTTATGACCAAGCTTCAAACCATTTTGCAGCTGTGCATAAGGTTTATGGTGCTAGTAATGTGTCAAGACTATTGTCACATCTTCCTATTCAAAATAGAAGTGATGCTGCCATCACTATATCATATGAAGCCTTGGCTCGCATGCAAGATCCTATATATGGTTGTGTTGCTCATATCTATGCATTGCAAAATCAGGTTGCAAGCTTGCAAGAGGAGATAGATATTCTTGGAAGTGTGATGGCAAATAATTTAAGTGTTAGTGTTGTGAATTGTGGAAATGTCGAAACACCACTCAACCCAACACAATATTACCATAATCAAAGTTTTGAATCATACATGGATATGGAGCTAACTCCAAATGCACATGGATTGGAAGAGCCTTTGTATGGTGATTTCAACTCCAATCCATTAGAGAAATTCCTATCAGGAATTGATCAAGAGGGGTTCCTGAACCACCCTTGGTTCAAGCATAATGCAAACATTAAGAACTAG 576 0.3872 MTGFGSSCGACKFLRRKCASDCVFAPYFSYDQASNHFAAVHKVYGASNVSRLLSHLPIQNRSDAAITISYEALARMQDPIYGCVAHIYALQNQVASLQEEIDILGSVMANNLSVSVVNCGNVETPLNPTQYYHNQSFESYMDMELTPNAHGLEEPLYGDFNSNPLEKFLSGIDQEGFLNHPWFKHNANIKN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04123 191 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Trre10g04123 191 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Trre10g04123 191 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04123 Trre-Chr10 50531681 50532786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04123 1 184 AS2 family AT5G06080 52.941 5.99e-57 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre10g04123 LOB 1e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04123 K13945 - gmx:100809636 303.523