Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04115 ATGTCTTCGCATTGGTGTTACAGGTGCAACAAATTTGTTAGGGTATGGAGGCTAGGGATGCCAATATGTTTAGATTGTGATAGCGGTTTTGTTGAAGAGCTCGAACATTCCACACGTTCTCTCCATGCGGACGGTGGTCCTCAAAGGAGGTTCCCTATGTCGGCGGCCATGTACATGATGGGCCAAAACAATAATAATTCCAATCAAAATACTCGTAGACGCCGTTGCAGAAACAATATTAACGGAGATTATAACATTTCTGACCCAATCATCATGATCCGTGGTAGCGGATCATCTGGGGGTACGGGCCGTGAGGGCGAAGGGAATCGTGGATTTGAACTTTTCTACGAAGATGGTGCCGGTTCTGGTCTCCGACCATTGCCTCCAAGGATGTCAGATTTTCTTCTTGGATCTGGATTTGAAAGGGTGATGGAAAACCTTTCTCATGTCGAATCTAATCGAAATAGAAATGAGCGACATAATCAACAACAATTACCGGCATCAAAATCCGCCGTAGAATTGTTACCAATGATTGAAATTAATGAAACTCATATGGAGATAGAATCACATTGCGCCGTTTGCAAAGAGATGTTTGAACTTGGCATTGTGGCAAGAGAAATGCCATGCAAACACATATACCACGATGAATGCATACTTCCATGGCTTGCAATAAAAAATTCTTGTCCGGTATGTCGCCATGAACTTCCTTGTGAGGAATCACCACAAAATAACAATAATCAAAATTTAGATGAGAATGTTGGGTTAACGATTTATCGGTTACCGGGTGGAGGGTTTGCCGTGGGAAGATTCTCTGGTGGAAGAAACGGCATTGCAGGCGGGGATGAAAGTGAAAGAGAGCTTCCTATTGTTTACACGGAGATGGATGGTGCATTTAACAATATTGGTGAACCAAGGAGAATTTCATGGTCATTAACATCATCTAGAGGAAGGAGAGGAAGAAGAAGTAGTGGGGGTGGATTTCGTAGAATGGTGAACAATTTGTTTGGATGTTTGGGAGGTGCGGGTGCAATTAGCAATAATCAACGTTCTCTTCCTACTACTAGAGAGTTTTCTCAATCTATTACTACCATGAGAAATAATAGTTCATCTAATACCAATGAGAGTTCTTCTACACGTTCACGTAGAACTTGGTCTATGGATGTAAATGGTGGAATTAGACCGTGGTAA 1188 0.4226 MSSHWCYRCNKFVRVWRLGMPICLDCDSGFVEELEHSTRSLHADGGPQRRFPMSAAMYMMGQNNNNSNQNTRRRRCRNNINGDYNISDPIIMIRGSGSSGGTGREGEGNRGFELFYEDGAGSGLRPLPPRMSDFLLGSGFERVMENLSHVESNRNRNERHNQQQLPASKSAVELLPMIEINETHMEIESHCAVCKEMFELGIVAREMPCKHIYHDECILPWLAIKNSCPVCRHELPCEESPQNNNNQNLDENVGLTIYRLPGGGFAVGRFSGGRNGIAGGDESERELPIVYTEMDGAFNNIGEPRRISWSLTSSRGRRGRRSSGGGFRRMVNNLFGCLGGAGAISNNQRSLPTTREFSQSITTMRNNSSSNTNESSSTRSRRTWSMDVNGGIRPW 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04115 395 MobiDBLite consensus disorder prediction 362 395 - -
Trre10g04115 395 Pfam Protein of unknown function (DUF1117) 253 371 IPR010543 -
Trre10g04115 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 126 236 - -
Trre10g04115 395 FunFam E3 ubiquitin-protein ligase RING1-like 153 238 - -
Trre10g04115 395 MobiDBLite consensus disorder prediction 362 385 - -
Trre10g04115 395 Pfam Ring finger domain 190 232 IPR001841 -
Trre10g04115 395 Pfam zinc-ribbon 3 34 IPR039525 GO:0061630
Trre10g04115 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 238 IPR013083 -
Trre10g04115 395 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Trre10g04115 395 SUPERFAMILY RING/U-box 176 244 - -
Trre10g04115 395 SMART ring_2 191 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04115 Trre-Chr10 50456610 50457797 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04115 126 249 C3H Transcription Factor Family AT5G01980 36.290 5.43e-22 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04115 K11982 - gmx:100789228 394.045