Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04112 ATGGGAGACGCAATTGATTTGTCTGGGGATGGAGGAGTCATCAAGACCATCGTGAGGAAGAGCAAGTCAGATGCTGTGGCTCCCACAGAAGATTTTCCTGTTGTTGACGTACACTATGAAGGCACGCTCGCTGATACCGGTGAAGTCTTCGACACTACACATGAAGACAACACTATATTCTCCTTTGAACTTGGAAAGGGTAGTGTTATCAAGGCTTGGGACATTGCAGTTAAAACCATGAAGGTTGGAGAAATTGCAAAAATAACATGCAAGCCAGACTATGCATATGGTAGCGCAGGATCTCCGCCAGATATACCTCCAGATGCAACACTTGTTTTTGAAGTTGAGCTAGTTGCCTGTCGGCCAAGGAAAGGTTCGACTACCGGAAGTGTTTCTGAGGAGAGGGCTAGGCTGGAGGAGTTGAAGAAGCAGAGAGAGCTTGCTGCTGCGGCTAAAGAGGAGGAGAAGAAGAAGAGAGAAGAGCAAAAAGCGGCAGCTGCAGCTCGTATGCAAGCAAAGCTTGATGCCAAGAAAGGTCAAGGAAAGGGTAAAGGGAAAGCAAAGTAG 567 0.4744 MGDAIDLSGDGGVIKTIVRKSKSDAVAPTEDFPVVDVHYEGTLADTGEVFDTTHEDNTIFSFELGKGSVIKAWDIAVKTMKVGEIAKITCKPDYAYGSAGSPPDIPPDATLVFEVELVACRPRKGSTTGSVSEERARLEELKKQRELAAAAKEEEKKKREEQKAAAAARMQAKLDAKKGQGKGKGKAK 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04112 188 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 11 181 - -
Trre10g04112 188 Gene3D - 3 120 IPR046357 GO:0003755
Trre10g04112 188 MobiDBLite consensus disorder prediction 149 166 - -
Trre10g04112 188 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 32 121 IPR001179 GO:0003755
Trre10g04112 188 MobiDBLite consensus disorder prediction 149 188 - -
Trre10g04112 188 FunFam Peptidylprolyl isomerase 1 120 - -
Trre10g04112 188 Coils Coil 131 171 - -
Trre10g04112 188 SUPERFAMILY FKBP-like 9 118 - -
Trre10g04112 188 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 34 118 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04112 Trre-Chr10 50431048 50432869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04112 4 146 Calmodulin-binding Proteins AT5G48570 33.784 3.85e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04112 K01802 - gmx:100500018 253.447