Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04103 ATGGGAAAGAAAAACAAAGCAATGAGTGAAAATAGCGACGGCACTATTAAACAATGCCCCTTAACTCTTTTCGTTGCAAATTTACCCTATTCTTTTACAAATACTCAGCTTGAAGAAACTTTCAGTGAAGTTGGACCTGTTAGACGTTGTTTCATGGTTACACCAAAGGGGTCTGACCAACATCGTGGTTTCGGTTATGTTACATTTGCTGTTGAGAAAGACGCTGACACCGCCGTTGAGCTGAAGAATGGTTCATTGGTTGGTGGCCGAAAAATTTCAGTGAAGCACGCAATGCCTCGTCCACCCCGTGAAAAAAAATCAAAACCAGATCAAGAGGGCAATAAAGATGATCTCACAGAGTCAAAAATTGATGATAAAGACAACGGATTATCTGGAGTAGAGAAGCCTGTTTCAGTTCCAAAGGAAGAATCAGTTCCAAAGGAAGAAGAAGAGAAAGTTTTGAATAAACCAAAAAACTCAAGGAAGCCTGTGGAAATAAAAAAAGCAGCTCTTTGTAATGATGCAGCAGATAAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGGACTGTTATATTTGGAGGTCTCATAAATTCTGCTATGGCTGAAGATGTTCATCGCCAAGCCAGAGATATTGGCACTGTGTGTTCTATCAAGTATCCCCTTTCAAGGAATGATCTTCAGCAACATGGTCTGCTGCAAGATGGCTGTACTTCAGATGCTTCCGCTGTACTGTATACAAGTGTAAAATCAGCTCGTGCTTCCGTTGCAAAATTGCATAAAAAAGAGATAGGAGGGGGAACTGTTTGGGCACGACAACTTGGCGGTGAGGGCGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTCCCTTTCAAGGCCAAAGAAAATGAAATAAGAGATGCATTTTCATCTGGGGGGCCTGTATGGGAGGTATTCATTCCACAGAAGTCTGACACAGGTCTTTCAAAGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTAAAAAACTCAATGGATCAAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGATAGTACTACCACTGAGGATGATGTTGAGCATAGTGACAAACAATCTGATCATGAAGATGATAGTGATGTTGATAGTGTCGTGGAGGAAGATGTTCCTTCTGAAGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAGGTTCTTAACAGCTTGATTACATCCTCCTCTGCCAAAGATGTGTCTGCAAATAACGATTCTACGTGTTCTGAAGAAAATAAGGAGCCAAAATCCAACGAAACTGTTAAGCACGCAGATAGTAAAGCATCTAAAGAGTCTGACAAGGTTTCTGCTATTTCTAAGCCCGAGACTTCCAGCAGATTATCTAATCCTAAGGAAACAGAAGATGATTTGCAAAGAACAGTTTTTATAAGCAATATTCCCTTTGAATGTGATACTGAAGAAGTGAAGCAAAGGTTTTCTGCATTTGGAGTAGTAGAGTATTTTGCTCCTGTTCTCCACCAATTGACCAAGCGTCCACGAGGGACTGGTTTTCTTATGTTTAAAACTGTGGAAGCAGCTGATAATGCGATTTCAGCTGCCAATGCTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAAGCTCTGGACAAGAAATCAGCTCATGAAAAGGAACTGGAGAAAGAAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGCCGGGACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGGCAAAACGCAAAGATTTGGAAAGGAAAAAGAAGACGAAGCTTCAATCTCCAAATTTCCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCGAAGTCCATGACGGAAAAACAACTAAAGAAGCTTTGCATTGATGCTGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGACAGATAAAGATTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAAAAACAATTTTCCCGTGGAGTCGCCTTTCTTGAATTTTCAGAGCATCAACATGCCCTTGTTGCTTTGAGAGTTCTTAACAATAATCCTGAAACTTTTGGTCCTGAACACCGACCAATTGTGGAGTTTGCTCTTGATAATGTTCAAACATTGAAACTACGTAATGCAAAGCTACAATATCAGCAGCAGGCTCCTCGTGATGACAACAGAAACGAAAATGATAAACCCGACAATGCAGGAGGTTACACACATGGAACCGACAGGAAACGAAAATCTCAAGAGCACGACAAACCAGCAAAAGACTCCGGATTGACTTCAAATAGTGAACAAGGAGGTAAAGTGGCAAATGGAAAATCTCCTCATGGAGACAAATCCAAAAGACAGAAAGGCAACCATAAGAGTACCGATACTGACATGTTATCATCGAAAGAAAGCCCAAAAGCTTCAGCGAGGAAGTTAAAGAATAACCAAGATGGCCAGAATCACGCTTCTAAATTACATGAAGGTAAAAATACTGCCATTGACAGTAATAATAGGAAAATATCAGGAAAGAAAGATGACTCTGTATATGGAAAGAGGAAGATGCAAAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGCCAAAGAAGAATAAAGATTCAATAGGGAAGGACACAGTAGATAAGCTTGACATGCTTATAGAACAATATAAATCCAAATTCTCACAAAAGGGTTACCAAGGAAATGATGGTGAGAAAAAACAACCTCAACAGCTTAGAAAATGGTACCAATCATAA 2913 0.4037 MGKKNKAMSENSDGTIKQCPLTLFVANLPYSFTNTQLEETFSEVGPVRRCFMVTPKGSDQHRGFGYVTFAVEKDADTAVELKNGSLVGGRKISVKHAMPRPPREKKSKPDQEGNKDDLTESKIDDKDNGLSGVEKPVSVPKEESVPKEEEEKVLNKPKNSRKPVEIKKAALCNDAADKGGGSEKQKVARTVIFGGLINSAMAEDVHRQARDIGTVCSIKYPLSRNDLQQHGLLQDGCTSDASAVLYTSVKSARASVAKLHKKEIGGGTVWARQLGGEGAKTQKWKLIVRNLPFKAKENEIRDAFSSGGPVWEVFIPQKSDTGLSKGFAFVKFTCKQDAENAIKKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDDSTTTEDDVEHSDKQSDHEDDSDVDSVVEEDVPSEDDFDKEADIARKVLNSLITSSSAKDVSANNDSTCSEENKEPKSNETVKHADSKASKESDKVSAISKPETSSRLSNPKETEDDLQRTVFISNIPFECDTEEVKQRFSAFGVVEYFAPVLHQLTKRPRGTGFLMFKTVEAADNAISAANAASGMGILVKGRPLKVLKALDKKSAHEKELEKEKNEVHDHRNLYLAKEGLILAGTPAAEGVSASDMAKRKDLERKKKTKLQSPNFHVSKTRLVIYNLPKSMTEKQLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEKQFSRGVAFLEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRNAKLQYQQQAPRDDNRNENDKPDNAGGYTHGTDRKRKSQEHDKPAKDSGLTSNSEQGGKVANGKSPHGDKSKRQKGNHKSTDTDMLSSKESPKASARKLKNNQDGQNHASKLHEGKNTAIDSNNRKISGKKDDSVYGKRKMQNQEQAGEKVSRKRPKKNKDSIGKDTVDKLDMLIEQYKSKFSQKGYQGNDGEKKQPQQLRKWYQS 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04103 970 FunFam RNA-binding motif protein 28 658 754 - -
Trre10g04103 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Trre10g04103 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 355 IPR000504 GO:0003723
Trre10g04103 970 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 570 IPR000504 GO:0003723
Trre10g04103 970 SUPERFAMILY RNA-binding domain, RBD 280 365 IPR035979 GO:0003676
Trre10g04103 970 PANTHER RNA-BINDING MOTIF PROTEIN 14B 19 970 - -
Trre10g04103 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 659 773 IPR000504 GO:0003723
Trre10g04103 970 Gene3D - 437 604 IPR012677 -
Trre10g04103 970 Gene3D - 2 113 IPR012677 -
Trre10g04103 970 MobiDBLite consensus disorder prediction 871 940 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 829 861 - -
Trre10g04103 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Trre10g04103 970 MobiDBLite consensus disorder prediction 770 970 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 777 812 - -
Trre10g04103 970 CDD RRM4_RBM28_like 659 757 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 140 162 - -
Trre10g04103 970 SMART rrm1_1 285 358 IPR000504 GO:0003723
Trre10g04103 970 SMART rrm1_1 22 95 IPR000504 GO:0003723
Trre10g04103 970 SMART rrm1_1 508 586 IPR000504 GO:0003723
Trre10g04103 970 SMART rrm1_1 660 752 IPR000504 GO:0003723
Trre10g04103 970 MobiDBLite consensus disorder prediction 457 485 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 367 428 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 945 970 - -
Trre10g04103 970 SUPERFAMILY RNA-binding domain, RBD 22 270 IPR035979 GO:0003676
Trre10g04103 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 362 IPR000504 GO:0003723
Trre10g04103 970 SUPERFAMILY RNA-binding domain, RBD 507 738 IPR035979 GO:0003676
Trre10g04103 970 MobiDBLite consensus disorder prediction 444 503 - -
Trre10g04103 970 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 590 IPR000504 GO:0003723
Trre10g04103 970 CDD RRM1_RBM28_like 22 100 - -
Trre10g04103 970 Gene3D - 271 399 IPR012677 -
Trre10g04103 970 MobiDBLite consensus disorder prediction 90 162 - -
Trre10g04103 970 Coils Coil 585 612 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 409 425 - -
Trre10g04103 970 CDD RRM2_RBM28_like 285 361 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 97 131 - -
Trre10g04103 970 MobiDBLite consensus disorder prediction 394 408 - -
Trre10g04103 970 Gene3D - 658 754 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04103 Trre-Chr10 50275018 50283233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04103 288 363 Eukaryotic Initiation Factors Gene Family AT3G11400 36.842 6.13e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04103 K14573 - gmx:100794821 1296.18