Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04100 ATGGCAATTGGATTCATGGAAGTACATCTTATCAAAGCTAAAGGCCTCAATAGCAGTTGTTTCTTTGGTGGAATGGAGGATCCCTATGTTTTTATACAATATCAAGGCCAAGAGAAGAGGAGCAATGTCGCTAAAGGTAGAGGCAGAAATCATTTGTGGGATGAGAAATTTATTTTCAAAGTTGAAAACCATGGATCAAGTGATAAAAACAAACTCATTTTTAAAATAATGGACAAAGACACCATTTCTGCTGATGACTTTATTGGACAAGCCATAATCTATGTAAAGGATTTATTGGCTGAAAATGGAGTTGCAAAGCTACCAGCTCTTAAGTATAGAGTGATTCGTGCTGATCAGTCTTATCGTGGAGAAATTGATGTTGCCATTACTTTTACTCCAAAGGTGGAAGATGAATTAATTGAAGAAGACATTGGAGGATGGAAAGAAAGTAATTACTATCTATCTTAG 468 0.3568 MAIGFMEVHLIKAKGLNSSCFFGGMEDPYVFIQYQGQEKRSNVAKGRGRNHLWDEKFIFKVENHGSSDKNKLIFKIMDKDTISADDFIGQAIIYVKDLLAENGVAKLPALKYRVIRADQSYRGEIDVAITFTPKVEDELIEEDIGGWKESNYYLS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04100 155 SMART C2_3c 5 107 IPR000008 -
Trre10g04100 155 Gene3D C2 domain 2 134 IPR035892 -
Trre10g04100 155 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Trre10g04100 155 Pfam C2 domain 6 101 IPR000008 -
Trre10g04100 155 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 135 IPR035892 -
Trre10g04100 155 PANTHER C2 DOMAIN-CONTAINING 3 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04100 Trre-Chr10 50249776 50251195 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04100 3 100 C2H2 Transcription Factor Family AT4G21160 32.323 4.34e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04100 - - gmx:100791344 207.608