Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04099 ATGACAATTGGGTTCATGGAAGTGCTTCTGGTGAAAGCAAAGGGTCTTCAAGAAACTGATGTCTTTGCTCACATGGATCCGTATGTTGTGTTACAATACAAAAGTCAAGAGAAAAAGAGCAGTGTTGTTCATGAGGGGGGCAGGAGTCCTGTATGGAATGAGAAGTTTGTATTCAGAGTGGAATACCCTGGATCAGGTGACCAGTACAAGCTCAACCTTAAAATCATGGACAAGGATGTTTTTTCTAGAGATGATTTTGTTGGCCAAGCCATAATCTATGTAAAAGATTTATTGGTGGAAGGAGTAGAGAACGGATCAGCTGAGCTTCATCCTCGCAAGTATAGTGTGGTTCGAGCTGACAATTCTTATTGCGGTGAAATCGAAGTTGGTTTAACATTTACTCGAAAGGAAGATGAATATGCCGACGACGACTTTGGAGGATGGAAGGATAGTGAATATTAA 462 0.4113 MTIGFMEVLLVKAKGLQETDVFAHMDPYVVLQYKSQEKKSSVVHEGGRSPVWNEKFVFRVEYPGSGDQYKLNLKIMDKDVFSRDDFVGQAIIYVKDLLVEGVENGSAELHPRKYSVVRADNSYCGEIEVGLTFTRKEDEYADDDFGGWKDSEY 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04099 153 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 137 IPR035892 -
Trre10g04099 153 Gene3D C2 domain 3 135 IPR035892 -
Trre10g04099 153 PANTHER C2 DOMAIN-CONTAINING 3 138 - -
Trre10g04099 153 SMART C2_3c 5 106 IPR000008 -
Trre10g04099 153 ProSiteProfiles C2 domain profile. 1 107 IPR000008 -
Trre10g04099 153 Pfam C2 domain 7 105 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04099 Trre-Chr10 50244696 50247045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04099 3 109 C2H2 Transcription Factor Family AT4G21160 31.776 2.03e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04099 - - gmx:100500493 274.248