Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre10g04097 | ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCCCGGAGAGGATACGGCGGAAGAGGACCTAGTAGGAGAGGAGGATACGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTAGGCGTAGAGAAAGCAACAATGGAAGTCTTTTGGTTCGGAACATTCCTTTAGATTGTAGACCTGAGGAACTTAGAGCACCGTTCGAGCGATTTGGACCGGTTCGTGATGTTTACATACCGAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCATATGAGGCCTCCGAGGCGCAGTACCATATGGACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCATAGGACTAGTAGATCCAGAGGACCTGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGTTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAACCGCTATCGATCAAGGTCCAGGTCGTTCTCTCCTGCCCCAAGACGCCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGCAGAACGCCCTAGATCGCCTAGAAGTCCTCCTAGAAGCCCTCCTAGAAGTCCTCTTGTGGATCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTATGGCAATGGTGCTGATCAGAATCAAAGCAATGGATATGCTGAGAAATTGTACAAATCTGAAGCTGATCGAGGCTGGAAGTCATCGGTACAAAGAACATCAAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCACCTAGACGTGGAAGATGA | 876 | 0.4943 | MRRNSPGYYSPPRRGYGGRGPSRRGGYGGGGGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPAPRRQGDYSVSPRRHAERPRSPRSPPRSPPRSPLVDRDGDHKRRSYSPAYGNGADQNQSNGYAEKLYKSEADRGWKSSVQRTSRSPPGSRSRSRSVDLSPRRGR | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre10g04097 | 291 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 49 | 118 | IPR000504 | GO:0003723 | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 265 | 281 | - | - | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 142 | 191 | - | - | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 237 | 251 | - | - | |
Trre10g04097 | 291 | SUPERFAMILY | RNA-binding domain, RBD | 43 | 153 | IPR035979 | GO:0003676 | |
Trre10g04097 | 291 | Gene3D | - | 39 | 164 | IPR012677 | - | |
Trre10g04097 | 291 | FunFam | Serine/arginine-rich SC35-like splicing factor SCL30 isoform A | 40 | 182 | - | - | |
Trre10g04097 | 291 | SMART | rrm1_1 | 48 | 121 | IPR000504 | GO:0003723 | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 126 | 291 | - | - | |
Trre10g04097 | 291 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 47 | 125 | IPR000504 | GO:0003723 | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Trre10g04097 | 291 | MobiDBLite | consensus disorder prediction | 195 | 211 | - | - | |
Trre10g04097 | 291 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 41 | 247 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre10g04097 | Trre-Chr10 | 50239075 | 50242162 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre10g04097 | 29 | 104 | Eukaryotic Initiation Factors Gene Family | AT3G11400 | 35.526 | 5.61e-06 | 45.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre10g04097 | K12900 | - | gmx:100804294 | 316.235 |