Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04097 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCCCGGAGAGGATACGGCGGAAGAGGACCTAGTAGGAGAGGAGGATACGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGGTGGTAGGCGTAGAGAAAGCAACAATGGAAGTCTTTTGGTTCGGAACATTCCTTTAGATTGTAGACCTGAGGAACTTAGAGCACCGTTCGAGCGATTTGGACCGGTTCGTGATGTTTACATACCGAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCATATGAGGCCTCCGAGGCGCAGTACCATATGGACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCATAGGACTAGTAGATCCAGAGGACCTGGGAGCTATGGGGGGCAAAGGTCTTCCTACCATGGGCGTTCTCGATCTCGTTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGTTCTAGAAACCGCTATCGATCAAGGTCCAGGTCGTTCTCTCCTGCCCCAAGACGCCAAGGTGACTACTCTGTTTCCCCTAGAAGGCATGCAGAACGCCCTAGATCGCCTAGAAGTCCTCCTAGAAGCCCTCCTAGAAGTCCTCTTGTGGATCGAGATGGGGATCATAAACGCAGGTCGTATTCTCCAGCTTATGGCAATGGTGCTGATCAGAATCAAAGCAATGGATATGCTGAGAAATTGTACAAATCTGAAGCTGATCGAGGCTGGAAGTCATCGGTACAAAGAACATCAAGATCACCCCCTGGATCTAGATCTAGATCAAGATCTGTTGATTTGTCACCTAGACGTGGAAGATGA 876 0.4943 MRRNSPGYYSPPRRGYGGRGPSRRGGYGGGGGGGGGGGGRRRESNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYEASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGRSRSRSISRSRSPPYHSGSRNRYRSRSRSFSPAPRRQGDYSVSPRRHAERPRSPRSPPRSPPRSPLVDRDGDHKRRSYSPAYGNGADQNQSNGYAEKLYKSEADRGWKSSVQRTSRSPPGSRSRSRSVDLSPRRGR 291
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04097 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 118 IPR000504 GO:0003723
Trre10g04097 291 MobiDBLite consensus disorder prediction 265 281 - -
Trre10g04097 291 MobiDBLite consensus disorder prediction 142 191 - -
Trre10g04097 291 MobiDBLite consensus disorder prediction 237 251 - -
Trre10g04097 291 SUPERFAMILY RNA-binding domain, RBD 43 153 IPR035979 GO:0003676
Trre10g04097 291 Gene3D - 39 164 IPR012677 -
Trre10g04097 291 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 40 182 - -
Trre10g04097 291 SMART rrm1_1 48 121 IPR000504 GO:0003723
Trre10g04097 291 MobiDBLite consensus disorder prediction 126 291 - -
Trre10g04097 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Trre10g04097 291 MobiDBLite consensus disorder prediction 1 48 - -
Trre10g04097 291 MobiDBLite consensus disorder prediction 195 211 - -
Trre10g04097 291 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 41 247 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre10g04097 Trre-Chr10 50239075 50242162 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04097 29 104 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 5.61e-06 45.4
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04097 K12900 - gmx:100804294 316.235