Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04095 ATGGGTTGTTGCTTTAGTGCTAGAATCAAAGCTGAAAGTCCTCCACGTAATGGTTCGAGTTCGAAGGACAGCAGCAAAGGAAATGACTTGAGTCGTCGAAGCAGCGGCAAGGTGTCCGCTCCACCTACTACGCCTCCAACTCCTCGAACCGAGGGTGAGATCTTGGGGTCTTCCAATATGAAGAGCTTCACTTTTAGTGAGCTAAAAACTGCTACAAGAAACTTTCGTCCGGATAGTGTGGTTGGTGAAGGTGGGTTTGGAGCTGTATTTAAGGGGTGGATTGATGAGCACTCGCTTGTGCCGGTTAGACCGGGAACTGGAGTTGTCATTGCTGTCAAGAAGCTTAACCAAGAAGGTTTACAAGGACACAGTGAATGGTTGACAGAAATCAATTACCTGGGACAGCTGCATCATCCTAATCTTGTGAAACTTATTGGTTACTGCTTCGAAGACGACCATCGGCTTTTGGTATATGAGTTTTTGACCAAGGGCAGTTTGGACAATCATTTATTTAGAAGAGCTTCTTACTTTCAACCACTTTCTTGGACCATCCGAATGAAGGTTGCTCTTGATGCTGCTAAAGGTCTTGCATATCTTCACAGCGATGAAGCAAAAGTCATATACCGAGACTTCAAAACTTCAAATATATTGCTCGATTCGAATTATAATGCAAAACTTTCCGATTTTGGCTTGGCAAAGGATGGACCAGCAGGTGATTCGAGTCATGTCTCTACAAGGGTAATGGGCACGTATGGCTATGCCGCTCCGGAATATATGGCAACAGGTCATTTGACCAAAAAGAGCGATGTGTATAGCTTCGGCGTTGTGCTCCTTGAAATTATGTCTGGCAAACGAGCACTCGACACCAACAGGCCATCAGGGGAACACAATTTAATTGAATGGGCCAAACCTTATCTCAACAGCAAACGCCGGATCTTCCAAGTTATGGACGCTCGCATCGAAGGCCAATACTCATTGCGTCAAGCAGTGAAAGCAGCTAACCTCGCGGTTCAATGCTTGTCTGTTGAACCAAGATTTAGACCGAAAATGGACGAGGTTGTAAGAGCATTGGAGGAACTTCAGGGTTCCTCAGATGACTTGGCCGGAGGAGTAGGAAGCGCTCGAGATCAAAATATTAGGAGTGGTCGTAGCTCGAGGAGTAATGGTCCTAGACAACAGAGAAGTAATAAACCAAGTGAAACAATAAATAAATGA 1215 0.4519 MGCCFSARIKAESPPRNGSSSKDSSKGNDLSRRSSGKVSAPPTTPPTPRTEGEILGSSNMKSFTFSELKTATRNFRPDSVVGEGGFGAVFKGWIDEHSLVPVRPGTGVVIAVKKLNQEGLQGHSEWLTEINYLGQLHHPNLVKLIGYCFEDDHRLLVYEFLTKGSLDNHLFRRASYFQPLSWTIRMKVALDAAKGLAYLHSDEAKVIYRDFKTSNILLDSNYNAKLSDFGLAKDGPAGDSSHVSTRVMGTYGYAAPEYMATGHLTKKSDVYSFGVVLLEIMSGKRALDTNRPSGEHNLIEWAKPYLNSKRRIFQVMDARIEGQYSLRQAVKAANLAVQCLSVEPRFRPKMDEVVRALEELQGSSDDLAGGVGSARDQNIRSGRSSRSNGPRQQRSNKPSETINK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04095 404 SUPERFAMILY Protein kinase-like (PK-like) 52 358 IPR011009 -
Trre10g04095 404 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Trre10g04095 404 Gene3D Transferase(Phosphotransferase) domain 1 161 371 - -
Trre10g04095 404 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
Trre10g04095 404 MobiDBLite consensus disorder prediction 1 56 - -
Trre10g04095 404 FunFam Probable serine/threonine-protein kinase PBL8 161 375 - -
Trre10g04095 404 CDD STKc_IRAK 81 360 - -
Trre10g04095 404 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Trre10g04095 404 Pfam Protein tyrosine and serine/threonine kinase 79 357 IPR001245 GO:0004672|GO:0006468
Trre10g04095 404 MobiDBLite consensus disorder prediction 377 404 - -
Trre10g04095 404 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Trre10g04095 404 PANTHER OS01G0588500 PROTEIN-RELATED 32 361 - -
Trre10g04095 404 ProSiteProfiles Protein kinase domain profile. 75 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04095 404 MobiDBLite consensus disorder prediction 364 404 - -
Trre10g04095 404 MobiDBLite consensus disorder prediction 13 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04095 Trre-Chr10 50223856 50226571 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04095 1 365 Glycoside Hydrolase AT3G07070 45.288 3.94e-108 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g04095 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04095 - - gmx:100800735 652.514