Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04090 ATGAGAACACCTTGTTGTGACAAAGAAAACATCAACAAAGGGGCTTGGTCTAAACAAGAAGATAAAAAGCTCATTGATTATATACAAGTTCATGGTGAAGGATGTTGGGGATCCATTCCTAAGGCTGCTGGGTTACATCGTTGTGGCAAAAGTTGTAGACTAAGATGGTTAAACTATTTGCGACCGGATATCAAACGTGGTATCTTTGCTCAAGATGAAGAAGACCTCATCATCAAACTTCATGCCCTCCTTGGCAATCGGTGGGCACTCATTGCTGGAAGGTTGCCTGGACGTACAGATAATGAAGTGAAGAACTATTGGAATTCTCATATTCGTAGAAAGCTAATAAAAATGGGAATTGATCCAAATAATCATAAGTTACACAAAGGTTTTCCTAGTCCTCATCATGTTTTTGCTGCGGGCACATCATCATCATCATGTGACAAGTCCATGAACAAAGTAGATATTAATAAACTCACCTTAATCAAATCTAAATCATGTGAAGAAGAGTACATTAATAGTAGTGTTTCTTTCACAAAAGAAACATCAATAATTAATAATTCTTCTTCCTCTTTGAATCTTGAACTAACCATTGCTTTACCTTCTCCAAATAATTGTGAGTCTCCCAAGACTAGGGATATGGATATTGATCTTAATTGTTAA 663 0.365 MRTPCCDKENINKGAWSKQEDKKLIDYIQVHGEGCWGSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWALIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHKGFPSPHHVFAAGTSSSSCDKSMNKVDINKLTLIKSKSCEEEYINSSVSFTKETSIINNSSSSLNLELTIALPSPNNCESPKTRDMDIDLNC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04090 220 Gene3D - 13 65 - -
Trre10g04090 220 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre10g04090 220 CDD SANT 71 111 IPR001005 -
Trre10g04090 220 SMART sant 65 113 IPR001005 -
Trre10g04090 220 SMART sant 12 62 IPR001005 -
Trre10g04090 220 FunFam MYB transcription factor 67 128 - -
Trre10g04090 220 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre10g04090 220 CDD SANT 15 60 IPR001005 -
Trre10g04090 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trre10g04090 220 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 184 - -
Trre10g04090 220 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre10g04090 220 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Trre10g04090 220 FunFam MYB-related transcription factor 12 65 - -
Trre10g04090 220 Gene3D - 68 130 - -
Trre10g04090 220 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre10g04090 220 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04090 Trre-Chr10 50163160 50166303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04090 2 201 MYB Transcription Factor Family AT4G38620 50.467 2.65e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04090 Myb_DNA-binding 3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04090 K09422 - gmx:100306391 313.153