Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04086 ATGGCCAACAACAAACGTGAAATCATCCAAGAGGATGAAACTGCAAGTGTGGAAGAAGGCAACCCTAACATCATGCAACTTTGTTGTTCATCAAATCAAACTATAACTTTGATACAAAAGGTGATTGCAGAAATCATTGGAACATATTTTGTAGTATTTGCTGGATGTGGTTCTTTAGCAGTGAACAAGATCTATGGCTCTGTCACATTTCCAGGGGTTTGCATAACTTGGGGACTAATTGTAATGGTCATGTGTTACTCTGTTGGTCATATCTCCAGCGGCCATTTCAATCCGGCTGTTACCATTACTTGGACCCTTTTTCGTCGAATCTCAATTAAAGAGGCTCCGTTATACATTTTTGCTCAGTTGCTCGGGGCGACGCTTGCAAGTGGCACATTATCTATGATGTTTGATATCTCGTCCAAAACTTATTTTGGAACGGTACCGGTTGGATCAAATGGCCAATCTTTAGTTGTTGAAATCATCACCAGTTTTCTCTTGATGTTTGTCATTTCAGCAGTTTCCACTGACGAGAGAGCGGTGAATGACTTAGCAGGTGTTGCAATTGGAATGACTATAATGTTAAATATCTTTATTGCAGGGCCTGTATCTGGAGGTTCAATGAACCCAGCAAGAAGTATTGGTCCTGCACTTGTGGTACATATTTACAAAGGGTTATGGATATACGTAGTTGGTCCAATTGTCGGCGCTATAGCCGGAGCAATTGCCTATAACCTTCTTAGATCCGTAGGCCAGCCGCATCCAGAGTTTGCCGTTGAAGCACCGTTGAGGAACATAGTTGTAGGTTGA 810 0.4198 MANNKREIIQEDETASVEEGNPNIMQLCCSSNQTITLIQKVIAEIIGTYFVVFAGCGSLAVNKIYGSVTFPGVCITWGLIVMVMCYSVGHISSGHFNPAVTITWTLFRRISIKEAPLYIFAQLLGATLASGTLSMMFDISSKTYFGTVPVGSNGQSLVVEIITSFLLMFVISAVSTDERAVNDLAGVAIGMTIMLNIFIAGPVSGGSMNPARSIGPALVVHIYKGLWIYVVGPIVGAIAGAIAYNLLRSVGQPHPEFAVEAPLRNIVVG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04086 269 CDD MIP 39 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 NCBIfam MIP family channel protein 43 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 PANTHER AQUAPORIN NIP2-1 14 250 IPR034294 -
Trre10g04086 269 Pfam Major intrinsic protein 33 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre10g04086 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Trre10g04086 269 Gene3D Glycerol uptake facilitator protein. 1 255 IPR023271 -
Trre10g04086 269 SUPERFAMILY Aquaporin-like 35 256 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04086 Trre-Chr10 50108265 50110332 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04086 7 266 Major Intrinsic Protein MIP AT5G37820 55.431 2.81e-105 306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04086 K09874 - gmx:100803763 357.066