Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04085 ATGATTGAAGAAGAAGATGGTTCACAAAGTACTAATGGATTAAGCAATGATTCAGCTTCAGCTTCTGCTTCTGCTACTACAAATTCTACTACTATTTGTGGTAGTAGCAAAAAAGGGTATGTTTATAACAATACAAGTTATGAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTATTATAATAATCTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAGCAAAGCTGGAATATGGTCTCTAATGAGAACAATTTGCAACAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGGATCCTATGGATCTATATTCAATAGTACAAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAAATGTCCCTTGTGATGATGATGATGGCGTAATAAACGAGTCAGAAACACGTGAATCAGTCTTGAAGAAGCGCCCTTCGATGGGAGAGAATATGCAACCTGGCAATGCCAAGAAACCATGCACAAATGCAAGTAAAAAAGAAAAACCTAAGTCATATCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCCAAGATGA 828 0.3671 MIEEEDGSQSTNGLSNDSASASASATTNSTTICGSSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMQGSESLLSFQQSWNMVSNENNLQQWNHVSPNFNNFETSSGSYGSIFNSTKEKQNGESSCGWLYSEPNVPCDDDDGVINESETRESVLKKRPSMGENMQPGNAKKPCTNASKKEKPKSYPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04085 275 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 190 246 IPR036638 GO:0046983
Trre10g04085 275 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Trre10g04085 275 MobiDBLite consensus disorder prediction 151 200 - -
Trre10g04085 275 Gene3D - 183 245 IPR036638 GO:0046983
Trre10g04085 275 SMART finulus 194 243 IPR011598 GO:0046983
Trre10g04085 275 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 14 245 IPR045843 GO:0003700|GO:0006355
Trre10g04085 275 Pfam Helix-loop-helix DNA-binding domain 198 238 IPR011598 GO:0046983
Trre10g04085 275 CDD bHLH_AtIND_like 189 251 - -
Trre10g04085 275 FunFam Transcription factor bHLH83 186 245 - -
Trre10g04085 275 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04085 Trre-Chr10 50094885 50096785 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04085 38 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.769 9.81e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g04085 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04085 - - gmx:106795957 362.459