Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04084 ATGGCACTAACCAACAACAACATTTTACATAGTTCAATCCTAAGTAACAAGTTTCAATCTTGTGTTTTTGATGAAACTACTATAGAGATTAACTCTATAATGTCTCATAAAAAATCTATGATTGAAGAAGAAGATGGTTCACAAAGTACTAATGGATTAAGCAATGATTCAGCTTCAGCTTCTGCTTCTGCTACTACAAATTCTACTACTATTTGTGGTAGTAGCAAAAAAGGGTATGTTTATAACAATACAAGTTATGAACTTGATGAAGAAGAGTCTTTGATTAATTTCAAAGGCAATGATGAGTATTATAATAATCTCATGCAAGGTAGTGAATCTTTGCTTAGTTTTCAGCAAAGCTGGAATATGGTCTCTAATGAGAACAATTTGCAACAATGGAATCATGTTAGTCCTAATTTCAATAACTTTGAAACTTCTAGTGGATCCTATGGATCTATATTCAATAGTACAAAAGAGAAGCAAAATGGTGAAAGTTCATGTGGGTGGTTATATTCTGAACCAAATGTCCCTTGTGATGATGATGATGGCGTAATAAACGAGTCAGAAACACGTGAATCAGTCTTGAAGAAGCGCCCTTCGATGGGAGAGAATATGCAACCTGGCAATGCCAAGAAACCATGCACAAATGCAAGTAAAAAAGAAAAACCTAAGTCATATCCTTCTAAGGATCCTCAAAGTGTTGCTGCCAAGAATAGAAGAGAGAGAATAAGTGAGAGGCTCAAGATCCTACAAGAACTTGTACCAAACGGTTCCAAGGTTGATTTGGTTACCATGTTGGAAAAAGCAATTAGTTATGTGAAGTTTCTTCAGTTACAAGTCAAGGTGTTGGCAGCTGATGAATTTTGGCCTGTTAATGGTGGAAAAGCTCCTGACATTGGTCAAGTAAAGCAAGCAATTGATGCAATTCTTTCATCTCCAAGATGA 945 0.3566 MALTNNNILHSSILSNKFQSCVFDETTIEINSIMSHKKSMIEEEDGSQSTNGLSNDSASASASATTNSTTICGSSKKGYVYNNTSYELDEEESLINFKGNDEYYNNLMQGSESLLSFQQSWNMVSNENNLQQWNHVSPNFNNFETSSGSYGSIFNSTKEKQNGESSCGWLYSEPNVPCDDDDGVINESETRESVLKKRPSMGENMQPGNAKKPCTNASKKEKPKSYPSKDPQSVAAKNRRERISERLKILQELVPNGSKVDLVTMLEKAISYVKFLQLQVKVLAADEFWPVNGGKAPDIGQVKQAIDAILSSPR 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04084 314 FunFam Transcription factor bHLH83 225 284 - -
Trre10g04084 314 Pfam Helix-loop-helix DNA-binding domain 237 277 IPR011598 GO:0046983
Trre10g04084 314 MobiDBLite consensus disorder prediction 39 69 - -
Trre10g04084 314 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 39 284 IPR045843 GO:0003700|GO:0006355
Trre10g04084 314 Gene3D - 223 284 IPR036638 GO:0046983
Trre10g04084 314 MobiDBLite consensus disorder prediction 190 239 - -
Trre10g04084 314 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 227 276 IPR011598 GO:0046983
Trre10g04084 314 MobiDBLite consensus disorder prediction 45 69 - -
Trre10g04084 314 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 229 285 IPR036638 GO:0046983
Trre10g04084 314 SMART finulus 233 282 IPR011598 GO:0046983
Trre10g04084 314 CDD bHLH_AtIND_like 228 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04084 Trre-Chr10 50094768 50096785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04084 77 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G37800 45.769 3.44e-59 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g04084 HLH 1.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04084 - - gmx:106795957 367.851