Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04079 ATGGAGAAGAGTAAGACAACATCAGGTGTAAGGAAAGGTGCATGGACATACGAAGAAGACAAGTTACTTAAATCTTGCATTATAAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGTCGAAAAAGTTGTAGATTAAGGTGGCTAAATTATTTAAACCCCACTATCAACAAAGAAATTTTATCTGAAGATGAAGTTGATATGATGCTAAGGTTACACAAACTCTTAGGAAACAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACAGCCAATTATGTGAAGAATTATTGGCAGACACATTTGCAGAAGAAGATGGTTTCAAGAAAATTAGAAGAAAACAAAGAAAAGGAGAAACTTGAGGAAACAGTTAATAAACCTCATGAAATTATTAAACCTCAACCCCTAACTTTCTCAGCAAATTCACCTTGGTTAAATAGGAAGTATATTAATTTTGTAACACCAATAGTGGCAGTTTCAACAAAAGATGGAACTGTTGCAAATGATCACATAGAGAATACTATGTTACCAATTAATGGTACTGATGGAGATTGTGCTGCACACTGGAAATTCAACAATGTCTGCCATATTGTGGTGGGAGAATTTGTTAAATTCCCAAATGTTAATGATAGCAATTGGGATTCCAACCTCTATGAATTTGATTCTATTTTGGATATTTTAAATTAG 711 0.3432 MEKSKTTSGVRKGAWTYEEDKLLKSCIIKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINKEILSEDEVDMMLRLHKLLGNRWSLIAGRLPGRTANYVKNYWQTHLQKKMVSRKLEENKEKEKLEETVNKPHEIIKPQPLTFSANSPWLNRKYINFVTPIVAVSTKDGTVANDHIENTMLPINGTDGDCAAHWKFNNVCHIVVGEFVKFPNVNDSNWDSNLYEFDSILDILN 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04079 236 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Trre10g04079 236 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Trre10g04079 236 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Trre10g04079 236 CDD SANT 69 110 IPR001005 -
Trre10g04079 236 Gene3D - 4 65 - -
Trre10g04079 236 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 7 132 - -
Trre10g04079 236 SMART sant 64 112 IPR001005 -
Trre10g04079 236 SMART sant 11 61 IPR001005 -
Trre10g04079 236 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Trre10g04079 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 63 IPR017930 -
Trre10g04079 236 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Trre10g04079 236 FunFam Myb transcription factor 12 64 - -
Trre10g04079 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 114 IPR017930 -
Trre10g04079 236 CDD SANT 14 59 IPR001005 -
Trre10g04079 236 Gene3D - 68 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04079 Trre-Chr10 50024345 50026636 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04079 4 147 MYB Transcription Factor Family AT1G66370 61.224 1.77e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04079 Myb_DNA-binding 8.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04079 - K09422 tpra:123921946 375.17