Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04078 ATGAAGAATACCAAAGGCGTGAGAAAAGGTGCATGGACATATGAGGAAGATAACCTACTCAAGAATTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTGAAAGAGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGACTTAGGTGGTTAAATTATTTAAGCCCCAACATCAAAAGAGGAAGCTTTGCTGAAGATGAAATTGATATGATCATAAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACGTCCAATGATATGAAGAATTATTGGAATGCACACTTGATTAATAAGGTTCCAAATCATATTGGTAGAGATTGTGCTTCTACATCAAAACCAAGTCTAGGTAATGTGCCACTACCTTGTGCAATGTCTATGGACAGTTTATGGAACTTGGAGGAGCCTTTAGGTGGTGAAATAATTGGCTCATGCTCTTCATTTCAAGAGGAGAATTTTAATATGGAGTTTCCAAATGTTGATGATTCCTTTTGGGACAATCTACGTGATTTTGATTCTCTTTGGGATCTTAATAACTAG 573 0.3752 MKNTKGVRKGAWTYEEDNLLKNCINKYGEGKWHLVPERAGLNRCRKSCRLRWLNYLSPNIKRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTSNDMKNYWNAHLINKVPNHIGRDCASTSKPSLGNVPLPCAMSMDSLWNLEEPLGGEIIGSCSSFQEENFNMEFPNVDDSFWDNLRDFDSLWDLNN 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04078 190 Gene3D - 63 126 - -
Trre10g04078 190 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre10g04078 190 CDD SANT 67 107 IPR001005 -
Trre10g04078 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Trre10g04078 190 CDD SANT 11 56 IPR001005 -
Trre10g04078 190 Gene3D - 1 61 - -
Trre10g04078 190 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Trre10g04078 190 SMART sant 61 109 IPR001005 -
Trre10g04078 190 SMART sant 8 58 IPR001005 -
Trre10g04078 190 FunFam Myb transcription factor 9 61 - -
Trre10g04078 190 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 112 - -
Trre10g04078 190 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre10g04078 190 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Trre10g04078 190 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre10g04078 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04078 Trre-Chr10 49993573 49997833 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04078 5 141 MYB Transcription Factor Family AT1G66370 63.043 3.43e-57 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04078 Myb_DNA-binding 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04078 - K09422 mtr:11424892 204.527