Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04075 ATGGAGAATACCAAAGGCGTGAGAAAAGGTGCATGGACATATGAGGAAGATAACCTACTCAAGAATTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTGAAAGAGCAGGATTGAATAGGTGCAGAAAAAGTTGTAGACTTAGGTGGTTAAATTATTTAAGCCCCAACATCAAAAGAGGAAGCTTTGCTGAAGATGAAATTGATATGATCATAAGGCTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGGAAGGCTTCCTGGTAGAACGTCCAATGATGTGAAGAATTATTGGAATGCACACTTGATTAATAAGGTGGTTTCAAAAAAAGAAGAAGAGAAGAAACATAAGGAAACCATGAAAACTCATGAAGTTATTAAACCTCGACCTATAACTTTTTCAACTAATTCACCTTGGTTGAAAGGAAAACATAATAATTTTGTGCCACGACCAATATTGTCTTCAAATAAAGATGATAAAATTCCTACATATCATGATGATCAATTGGAGACTATGCAGGTTCCAAATCATATTGGTAGAGATTGTGCTTCTACATCAAAACCAAGTCTAGGTAATGCGTCGATACCTTGTGCAATGTCTACTGACAGTTTATGGAACTTGGAGGAGCCTTTAGGTGGTGAAATAATTGGCTCAAGCTCTTCATTTCAAGAGGAGAATTATAATATGGAGTTTCCAAATGTTGATGATTCCTTTTGGGATAATCTTTGTGATTTTGATTCTCTTTGGGATCTTAATTAG 774 0.3592 MENTKGVRKGAWTYEEDNLLKNCINKYGEGKWHLVPERAGLNRCRKSCRLRWLNYLSPNIKRGSFAEDEIDMIIRLHNLLGNRWSLIAGRLPGRTSNDVKNYWNAHLINKVVSKKEEEKKHKETMKTHEVIKPRPITFSTNSPWLKGKHNNFVPRPILSSNKDDKIPTYHDDQLETMQVPNHIGRDCASTSKPSLGNASIPCAMSTDSLWNLEEPLGGEIIGSSSSFQEENYNMEFPNVDDSFWDNLCDFDSLWDLN 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04075 257 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
Trre10g04075 257 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Trre10g04075 257 CDD SANT 67 107 IPR001005 -
Trre10g04075 257 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 159 - -
Trre10g04075 257 CDD SANT 11 56 IPR001005 -
Trre10g04075 257 Gene3D - 64 133 - -
Trre10g04075 257 SMART sant 8 58 IPR001005 -
Trre10g04075 257 SMART sant 61 109 IPR001005 -
Trre10g04075 257 Pfam Myb-like DNA-binding domain 62 106 IPR001005 -
Trre10g04075 257 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Trre10g04075 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 111 IPR017930 -
Trre10g04075 257 Gene3D - 1 62 - -
Trre10g04075 257 FunFam Myb transcription factor 9 61 - -
Trre10g04075 257 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Trre10g04075 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 60 IPR017930 -
Trre10g04075 257 FunFam Transcription factor MYB113 64 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04075 Trre-Chr10 49960432 49966474 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04075 2 165 MYB Transcription Factor Family AT1G66370 53.403 5.04e-62 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04075 Myb_DNA-binding 3.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04075 - K09422 mtr:11424892 366.696