Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04072 ATGGATCAGAAGACAAGAGGTGTGAGAAAAGGTGCATGGACATACGAGGAAGATAAGCTACTCAAGGATTGCATTAACAAGTATGGTGAAGGAAAGTGGCATTTAGTTCCTCAAAGAGCAGGATTAAATAGGTGCCGGAAAAGTTGTAGATTGAGGTGGTTAAACTATTTAAACCCTGCCATTAATAGAGAAAGTTTTTCCGAGGATGAAGTTGATATGATGTTAAGGTTACACAAACTCTTAGGAAACAGATGGTCACTAATTGCTGCAAGACTGCCGGGTAGAACTGCTAATGATGTGAAGAATTATTGGCACACAAACTTGCGCAAGAAGGTGGTTCCAAGAAAAATAGAAGAAAAAAAGAAACCTTTGGAATTTACAATGAAAGCTCATGAAATTATTAAACCTCAACCTCGAACTTTTTCATCTCGTTCACTTTGGTTGAATGAGAAACATAATAATAATTTTGTGAAACCAATTGTGACGGTTTCGACAAAAGATGTTCCTGTAGCTAAAGAAAGTGACAAAGAGTGTACTATGCTACCAATTAATAGTGATGGAGATTGTACTGTACAACCATATGTTGAAAGTTCTACAATGTCTACCATGTGGTGGGATAGTTTGTTAAATGTGAGCAGTGACAAGATTGGTTCATGCTCTTTGTTACAAGAGGAGGAATATTCCAATTTAGAGTTTGCAAATGTTGAGAATTTTTTGAATGAAGATCCCAATGTCAATGATTGCTATTGGGAATCCAACATTTGTGAATTTGATTCCCTTTTAGATATCTTAAATTAA 798 0.3584 MDQKTRGVRKGAWTYEEDKLLKDCINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPAINRESFSEDEVDMMLRLHKLLGNRWSLIAARLPGRTANDVKNYWHTNLRKKVVPRKIEEKKKPLEFTMKAHEIIKPQPRTFSSRSLWLNEKHNNNFVKPIVTVSTKDVPVAKESDKECTMLPINSDGDCTVQPYVESSTMSTMWWDSLLNVSSDKIGSCSLLQEEEYSNLEFANVENFLNEDPNVNDCYWESNICEFDSLLDILN 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04072 265 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 171 - -
Trre10g04072 265 CDD SANT 65 108 IPR001005 -
Trre10g04072 265 FunFam Myb transcription factor 10 62 - -
Trre10g04072 265 CDD SANT 12 57 IPR001005 -
Trre10g04072 265 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Trre10g04072 265 Gene3D - 1 63 - -
Trre10g04072 265 Pfam Myb-like DNA-binding domain 63 108 IPR001005 -
Trre10g04072 265 Pfam Myb-like DNA-binding domain 10 57 IPR001005 -
Trre10g04072 265 Gene3D - 65 133 - -
Trre10g04072 265 SMART sant 9 59 IPR001005 -
Trre10g04072 265 SMART sant 62 110 IPR001005 -
Trre10g04072 265 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Trre10g04072 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 5 61 IPR017930 -
Trre10g04072 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 112 IPR017930 -
Trre10g04072 265 SUPERFAMILY Homeodomain-like 7 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04072 Trre-Chr10 49943343 49945238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04072 1 209 MYB Transcription Factor Family AT1G66370 48.485 4.48e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04072 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04072 - K16166 tpra:123921946 383.259