Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04060 ATGTTACTAACAACTTTCTTCTTTCTCTTCACACTCTCTTCAACAACACCAACTAAAGTAACCTCACACTATTCCTCTTCATCTTCTGAACCATCACTTTCTCAACAAACCTCCCCTTCCTTCTCCGAATGGCGATCTGCACGTGCAACCTACTACGCCGCCAGAGATCCACGTGACACAGTAGGCGGCGCGTGCGGTTACGGCGACCTAAACAAGGCCGGTTATGGCATGGCAACGGTTGGTCTTAGCGAAGCTTTGTTTGAACGAGGTCAGATCTGTGGCGCGTGCTTTGAATTACGGTGTGTGGAGGATTTACGGTGGTGTATTCCTGGAACTTCGATTATCGTCACCGCAACTAATTTCTGTGCGCCGAATTATGCATTTACGTCAGAAGAAGGTGGACACTGTAATCCTCCGAATAAGCATTTTGTTCTTCCGATTGATGCTTTTGAGAAGATAGCTATATGGAAAGCTGGTAACATGCCTCTTCAATATCGTAGGATAAAGTGCAGAAGGGAAGGCGGAGTCCGATTTACAGTCACTGGTTCTGGTATCTTCATTTCAGTGCTGATCAGCAACGTTGCTGGCCACGGAGACATCGTTGCGGTGAAGGTGAAGGGTTCGAGAACAGGTTGGCTTTCAATGGGTCGAAATTGGGGCCAAAACTGGCATATAAACGCATTACTACAGAATCAACCCCTTTCATTTGAGGTTACTAGTAGTGATGGAAAAACAGTTACAGCTTACAACGTTGCTCCCAAGGATTGGAGTTTCGGACAGACCTTTGAAGGCAAACAATTTGATTATTAA 810 0.458 MLLTTFFFLFTLSSTTPTKVTSHYSSSSSEPSLSQQTSPSFSEWRSARATYYAARDPRDTVGGACGYGDLNKAGYGMATVGLSEALFERGQICGACFELRCVEDLRWCIPGTSIIVTATNFCAPNYAFTSEEGGHCNPPNKHFVLPIDAFEKIAIWKAGNMPLQYRRIKCRREGGVRFTVTGSGIFISVLISNVAGHGDIVAVKVKGSRTGWLSMGRNWGQNWHINALLQNQPLSFEVTSSDGKTVTAYNVAPKDWSFGQTFEGKQFDY 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04060 269 PRINTS Expansin signature 133 150 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 186 207 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 101 112 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 150 163 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 250 266 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 74 88 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 114 124 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 174 186 IPR002963 GO:0009664
Trre10g04060 269 PRINTS Expansin signature 221 242 IPR002963 GO:0009664
Trre10g04060 269 CDD DPBB_EXPA_N 43 170 - -
Trre10g04060 269 PANTHER EXPANSIN-A15 16 267 IPR002963 GO:0009664
Trre10g04060 269 Pfam Lytic transglycolase 80 165 IPR009009 -
Trre10g04060 269 Gene3D - 27 171 IPR036908 -
Trre10g04060 269 SUPERFAMILY PHL pollen allergen 172 264 IPR036749 -
Trre10g04060 269 Pfam Expansin C-terminal domain 176 253 IPR007117 -
Trre10g04060 269 SMART dpbb_1 79 165 IPR007112 -
Trre10g04060 269 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 185 264 IPR007117 -
Trre10g04060 269 SUPERFAMILY Barwin-like endoglucanases 43 193 IPR036908 -
Trre10g04060 269 MobiDBLite consensus disorder prediction 18 41 - -
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 250 264 IPR007118 GO:0005576
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 83 101 IPR007118 GO:0005576
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576
Trre10g04060 269 PRINTS Expansin/Lol pI family signature 43 58 IPR007118 GO:0005576
Trre10g04060 269 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 62 175 IPR007112 -
Trre10g04060 269 Gene3D - 175 267 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04060 Trre-Chr10 49828059 49830462 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04060 43 268 Expansin Gene Family AT3G03220 83.186 8.70e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04060 - - gmx:100784516 465.692