Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04059 ATGCTTTTTGAACAAAGTTTGGTTTTGTTAAGAGAAAAGCAAAGATTTTCATCACTAGATTCTGATTCCATGGAGATTCTGGGTCAAAAAGAAGAAATGCATTCTGTTGTACATGTACACAAACTACTTGATCAATTTTCATGTGGAAATGATTATGCCTTGAAGGTAAGGAAACCATATACTATCACAAAGCAAAGAGAAAAGTGGACAGATGAAGAACATAAGAAGTTCCTTGAAGCTTTGAAGTTATACGGCCGAGCTTGGCGAAAAATCGAAGAACATGTTGGCACAAAGACTGCTGTGCAGATTCGAAGTCATGCTCAGAAGTTTTTTTCTAAGATTAATCGAGACACTAATGGGAACGATACAACAATGGTGGAGACTATTGAAATTCCGCCTCCACGACCAAAACGGAAGCCGATTCATCCTTATCCACGTAAACTAGTTGAAATCCCAAAGAATGAAATCTGCAACATGGAACAGCCACTGAGGTCTAATTCTCTTGTGTCGTTAGATTTTGGTCAAGAAAACAACTCGCCCAAGTCGGTACTATCTGCAGTTGCTTCAGAAACCCTCGGTTTCTCTGATTCGGATTCTCCAACTGGAAGTTTGTCCCCTGTCTCATCTATTAGTGCTGTCCATACACATAGATTTCCACTTCTCGAGTCCAAATCATCATCATCCGAAGAAGATTTGTCTCAACAAATAGATGAACTGAATGCCGATTCAGCTGACGATGAACAACCTCTAATGAAACTGGAGCTTTTCTCTAATGAGACCGTCTTTACCAAAGACGATGAAGCAACAGAAGAATCACCTCGTCGAACACTCAAACTTTTCGGAACAACTCTACTAGTAAACGATACTTGCAAACCTTCTTCTACATCAACAGATGCATCAAAACCAGTACCTTCCATGCATCTTACGCAACAACTTCAACGTAGATGTTCAGATATTGGTCTAGCAACGGTTGTACCTTGGTGGACTCTCTCCGACAATTCAGCCTTTAAACCACTGCACAAGGAACACGAGGGGGAAAATTCACATTCTAATAACGGAGAACGTGAAGATAAAGAAACTCAAAAGGAAGGATCGTGTGTTGGTTCTAACACAAGTTCAATAAACGACAGCGAAAGCAATGAAAAAGAAAGCCAGTGTTCACCAATAAGACATAAAACATTTGGTAAAGGGTTTGTACCATATAAAAGATGCATGACAGAAAGAGAAAACCATTGTTCAACAATAACAGATGAGAGGAGAGAACATCAACGTATGAGGCTTTCTTTATAG 1290 0.3961 MLFEQSLVLLREKQRFSSLDSDSMEILGQKEEMHSVVHVHKLLDQFSCGNDYALKVRKPYTITKQREKWTDEEHKKFLEALKLYGRAWRKIEEHVGTKTAVQIRSHAQKFFSKINRDTNGNDTTMVETIEIPPPRPKRKPIHPYPRKLVEIPKNEICNMEQPLRSNSLVSLDFGQENNSPKSVLSAVASETLGFSDSDSPTGSLSPVSSISAVHTHRFPLLESKSSSSEEDLSQQIDELNADSADDEQPLMKLELFSNETVFTKDDEATEESPRRTLKLFGTTLLVNDTCKPSSTSTDASKPVPSMHLTQQLQRRCSDIGLATVVPWWTLSDNSAFKPLHKEHEGENSHSNNGEREDKETQKEGSCVGSNTSSINDSESNEKESQCSPIRHKTFGKGFVPYKRCMTERENHCSTITDERREHQRMRLSL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04059 429 NCBIfam myb-like DNA-binding domain, SHAQKYF class 64 113 IPR006447 GO:0003677
Trre10g04059 429 FunFam protein REVEILLE 6 isoform X1 68 116 - -
Trre10g04059 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Trre10g04059 429 ProSiteProfiles SANT domain profile. 64 115 IPR017884 -
Trre10g04059 429 CDD SANT 68 111 IPR001005 -
Trre10g04059 429 PANTHER SWI/SNF COMPLEX-RELATED 45 380 - -
Trre10g04059 429 MobiDBLite consensus disorder prediction 340 388 - -
Trre10g04059 429 MobiDBLite consensus disorder prediction 124 143 - -
Trre10g04059 429 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Trre10g04059 429 MobiDBLite consensus disorder prediction 340 363 - -
Trre10g04059 429 SMART sant 65 113 IPR001005 -
Trre10g04059 429 MobiDBLite consensus disorder prediction 364 382 - -
Trre10g04059 429 Gene3D - 68 115 - -
Trre10g04059 429 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre10g04059 429 SUPERFAMILY Homeodomain-like 60 116 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04059 Trre-Chr10 49814478 49817044 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre10g04059 Myb_DNA-binding 3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04059 - - gmx:778060 483.796