Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04055 ATGAGTCGTAAGAAGAATAACTCCGTTTCTGTGCTTATTTCCGATCCACAAGTGTTCGATTGCTACAATTGCTCTCAAACCTTAACTATTCCAGTCTTTCAATGTGATAATGGTCATATTGTTTGCTCTACCTGCTATCCTAAACTTATGAACAAGTGTCGCAAGTGCTCATTGCGCATTAGCTCAAAACGTTGTAAAGCCATTGAGAATATATTGCAATCAACGGAAATGCCATGTCCCAATGAAATACACGGTTGTAAGGAGAGGATAAGTTACCTTGGAAATGGGAAGCATGAGGAATGCATCCATGAGCCATGTTACTGCCCCCTTTTAGGTTGTGACTTTGTTGCATCTTCGGAAGTGTTGTCCAACCATTTCAGCCATAAACACGGGGATTCTCAAATTGAATTTTCTTATGGTCACTCCTTTGTTCTCTCCATGAAGTCAAATGATGAAACCATTGTTCTTCAAGAGGAAAGCGATGGCAAACTATTTATTCTCAATAATAGTACTATGCATTTGGGAAATACAGTCAATATTTGTTGCATTGGTCCTAACTCTTCTGAATTCGAGTATAGTTACGATATATTGGCTTGGTCTCAGACATGCAAACTCACATTTCATTCTTTTGCAAAGAACGTTCAACGTGTTACTTTACCATTTTCATCACATTTCCTTGTCATTCCATCTGGTTCTTTTGAACCTCTCAAGCTAGAAATTTGCATAACCCCATTGATGCAAATCTTCATACAGACCATGACTGGAAAGATAATCCTCGTCAGGGTTAAGAGTTCAGACACAATAGTCGATGTGAAGAAGAAGATTTTTGACAAGGGGGGCTACAAAGTGCACGATCAACGTCTGATATTTGACGGTAGGCAACTAGAAGACATGCGGACTGTTGCCAATTACAACATCCAAAACAAGTCAATCATCGACCTTGTGCTCCGCCTTACCGGGGACTAG 966 0.3996 MSRKKNNSVSVLISDPQVFDCYNCSQTLTIPVFQCDNGHIVCSTCYPKLMNKCRKCSLRISSKRCKAIENILQSTEMPCPNEIHGCKERISYLGNGKHEECIHEPCYCPLLGCDFVASSEVLSNHFSHKHGDSQIEFSYGHSFVLSMKSNDETIVLQEESDGKLFILNNSTMHLGNTVNICCIGPNSSEFEYSYDILAWSQTCKLTFHSFAKNVQRVTLPFSSHFLVIPSGSFEPLKLEICITPLMQIFIQTMTGKIILVRVKSSDTIVDVKKKIFDKGGYKVHDQRLIFDGRQLEDMRTVANYNIQNKSIIDLVLRLTGD 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04055 321 ProSiteProfiles Zinc finger SIAH-type profile. 74 131 IPR013010 GO:0008270
Trre10g04055 321 Gene3D - 243 321 - -
Trre10g04055 321 SMART ubq_7 246 317 IPR000626 GO:0005515
Trre10g04055 321 SUPERFAMILY Ubiquitin-like 234 320 IPR029071 -
Trre10g04055 321 Pfam Ubiquitin family 248 318 IPR000626 GO:0005515
Trre10g04055 321 SUPERFAMILY TRAF domain-like 78 242 - -
Trre10g04055 321 ProSiteProfiles Ubiquitin domain profile. 246 321 IPR000626 GO:0005515
Trre10g04055 321 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 126 IPR013083 -
Trre10g04055 321 FunFam 2'-5'-oligoadenylate synthase-like protein 2 246 318 - -
Trre10g04055 321 PRINTS Ubiquitin signature 277 297 IPR019956 -
Trre10g04055 321 PRINTS Ubiquitin signature 256 276 IPR019956 -
Trre10g04055 321 PRINTS Ubiquitin signature 298 319 IPR019956 -
Trre10g04055 321 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 3 243 IPR044286 -
Trre10g04055 321 Pfam Seven in absentia protein family 64 215 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04055 Trre-Chr10 49779490 49781367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04055 246 320 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.333 1.16e-22 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04055 K04506 - mtr:11432566 395.201