LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g04049	ATGTCTCATCTTTCTCTCTCCTTTCAACTCTTCTTCTTCATAGCTATTTCAATATTCAACTTTTCTATAATCACTTCCACCGAATTCGACTTCGGAACATTAACTCTCACAAGTCTAAAACTTCTCGGCGATGCCCATTTAAACAATGGCACCGTAACACTAACACGTGACCTCACCGTTCCATTTTCCGGCGCCGGACAAGCTCTTTATTCCCGTCCAATCAAATTCCGACAACCTGGTACCACCATTCCGGCGAGCTTCACAACTTTTTTCTCTTTCTCTGTTACCAATTTGAACCCTTCTTCCATCGGTGGTGGTCTTGCTTTTGTAATTACCCCCGACGCCGATTCTCTCGGTAACGCCGGTGGTTATCTTGGTCTTGCCACCGATGGGTTTGTTGCTGTTGAATTTGATACTTTAATGGACGTTGAATTTAAAGATATTAATGGGAATCATGTTGGTGTTGATCTTAATAGTGTTGTTTCTAGTAAAGTTGGTGACTTGGATTCAATTGGGGTTGATCTTAAAAGTGGTGATTCAGTTAATGCTTGGATTGAATTTGATGGATCCAATAATGGGTTTAATGTTTGGGTTTCTTATTCTAATTTGAAACCTAAAGATCCAATTTTGTCAATGAATCTTGATATGGGTCAGTATTTGAATGATTTTATGTATGTTGGGTTTTCTGGTTCAACTCAAGGGAGTACAGAGATTCATAGAGTTGAATGGTGGAGTTTTAGTTCATCTTTTGTTTCGGGTTCGAGTTATTCTTCCGGTTTACCGCCTCCTCCGGCTGTTAGTTTGATGAATACGACGGCGAGTTCAGCGAGGTCACCACCTCCTTCTATGGCTCCTTCAATGAATTCTACAAATGTAGAAAGAAAAGAGAGTAGGAAGAGTTGTCATAATGGGTTGTGTAAGCAAGGTTTAGGAGCTGTTGCTGGGGTTGTTACTGCTGGTGCTTTTGTTTTAGCACTTTTTGCAGGGTCTATGATATGGTTGTATTCTAAGAAAGTGAAGCGTGTGAGTAGATTTGATTCTCTTGGATCAGAGATAATTAAAATGCCTAAGCAGTTTAGTTACAAGGAGCTTAAATCTGCTACTAAGTGTTTCAATGGTAATAGGATTATTGGTCATGGTGCATTTGGGACTGTGTATAAGGGAATTTTGACTGAGAATGGTGACATTGTTGCTGTGAAGAGGTGTAGTCATAGTAGTCAAGGAAAGAATGAGTTTTTATCTGAGTTGTCGATAATTGGTAGCCTTAGACATCGGAATCTTGTTAGACTTCAAGGATGGTGTCATGAGAAAGGTGAGATTTTGTTGGTGTACGATTTGATGCCTAACGGTAGTTTGGATAAGGCTTTGTTCGAGGCTAGAACGCCTCTACCTTGGTCTCACCGTCGCAAGATTTTGTTAGGTGTAGCATCTGCTTTGGCTTACTTGCATCAAGAGTGTGAAAATCAGGTAATTCATAGAGACATTAAGACCAGTAACATAATGTTAGATGAAGGTTTTAATGCGCGTTTGGGAGATTTTGGATTAGCAAGACAAACTGAGCATGACAAGTCTCCGGATGCCACCGTGGCTGCTGGAACAATGGGATATCTAGCACCGGAGTATCTACTCACAGGACCTCGAGAAAGAAATTTTGGGGTTTATTATGCAATTCTGCCTCTGGTGTACACATTTTGGCATAAATTTATTCAAGTTGTTCGTTCATCTGATGCTGAAGAGCAATGCAAGATGTTGGAATGGAATGTTACAGGCAATATGGGAAGGGTTGTAGAACTTTTGCTTAGATCATTGTATAAGAGTCCAGAGTTGCTAAATCTTTGA	1839	0.4029	MSHLSLSFQLFFFIAISIFNFSIITSTEFDFGTLTLTSLKLLGDAHLNNGTVTLTRDLTVPFSGAGQALYSRPIKFRQPGTTIPASFTTFFSFSVTNLNPSSIGGGLAFVITPDADSLGNAGGYLGLATDGFVAVEFDTLMDVEFKDINGNHVGVDLNSVVSSKVGDLDSIGVDLKSGDSVNAWIEFDGSNNGFNVWVSYSNLKPKDPILSMNLDMGQYLNDFMYVGFSGSTQGSTEIHRVEWWSFSSSFVSGSSYSSGLPPPPAVSLMNTTASSARSPPPSMAPSMNSTNVERKESRKSCHNGLCKQGLGAVAGVVTAGAFVLALFAGSMIWLYSKKVKRVSRFDSLGSEIIKMPKQFSYKELKSATKCFNGNRIIGHGAFGTVYKGILTENGDIVAVKRCSHSSQGKNEFLSELSIIGSLRHRNLVRLQGWCHEKGEILLVYDLMPNGSLDKALFEARTPLPWSHRRKILLGVASALAYLHQECENQVIHRDIKTSNIMLDEGFNARLGDFGLARQTEHDKSPDATVAAGTMGYLAPEYLLTGPRERNFGVYYAILPLVYTFWHKFIQVVRSSDAEEQCKMLEWNVTGNMGRVVELLLRSLYKSPELLNL	612

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g04049	612	ProSiteProfiles	Protein kinase domain profile.	371	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04049	612	MobiDBLite	consensus disorder prediction	269	289	-	-
	Trre10g04049	612	FunFam	L-type lectin-domain containing receptor kinase VIII.1	335	446	-	-
	Trre10g04049	612	SMART	serkin_6	371	604	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04049	612	ProSitePatterns	Protein kinases ATP-binding region signature.	377	400	IPR017441	GO:0005524
	Trre10g04049	612	Pfam	Protein kinase domain	374	545	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g04049	612	CDD	lectin_legume_LecRK_Arcelin_ConA	43	244	IPR001220	GO:0030246
	Trre10g04049	612	PANTHER	-	50	554	-	-
	Trre10g04049	612	FunFam	L-type lectin-domain containing receptor kinase VIII.1	25	259	-	-
	Trre10g04049	612	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	490	502	IPR008271	GO:0004672\|GO:0006468
	Trre10g04049	612	Gene3D	Transferase(Phosphotransferase) domain 1	447	579	-	-
	Trre10g04049	612	SUPERFAMILY	Concanavalin A-like lectins/glucanases	25	264	IPR013320	-
	Trre10g04049	612	Gene3D	-	24	258	-	-
	Trre10g04049	612	SUPERFAMILY	Protein kinase-like (PK-like)	352	575	IPR011009	-
	Trre10g04049	612	Gene3D	Phosphorylase Kinase; domain 1	334	446	-	-
	Trre10g04049	612	Pfam	Legume lectin domain	27	251	IPR001220	GO:0030246
	Trre10g04049	612	ProSitePatterns	Legume lectins beta-chain signature.	133	139	IPR019825	-
	Trre10g04049	612	FunFam	Os07g0541700 protein	447	533	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g04049	Trre-Chr10	49729747	49732881	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g04049	6	545	Receptor kinase-like Gene Family	AT3G53380	71.196	0.0	741

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Trre10g04049		Lectin_legB	8.1e-56	CL0004

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g04049	-		-	gmx:100793157	826.624