Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04039 ATGTTGATTGAAATTGCAGTAGCTTTATTTATCATTGCTCTGTTTATCCATTTGCGTCCAACTCCCTCCGCCGCTAAATCAAAAACACTTCGTCACCTTCCAAATCCTCCAAGTCCAAAACATCGTCTTCCATTCATTGGTCATCTTCATCTTTTAGATAACCCTCTTCTTCACCATTCTCTTATCCGTTTAGGAGAACGTTATGGTCCCTTATACTCTCTGTACTTTGGTTCCGTGCCTACTATTGTAGCGTCCACCCCTGATTTGTTTAAACTCTTTCTTCAAACACATGAAGCTATTTCCTTTAACACAAGATTCCAAACCTCTGCTATTAAACGTTTAACTTATGATAACTCTGTTGCTATGGTTCCTTTTGGACCTTACTGGAAGTTCATTAGGAAACTTATTATGAATGATCTTCTTAATGCTTCCACTGTCAACAAGTTGAGACCTTTAAGGAGCAAAGAAATCCATAAGTTTCTTAATGTTATGGCTAAAAGTGCTGAAACTCAACAGCCACTTAATATAACCGAGGAGCTTCTTAAATGGACAAATAGTACAATCTCAACTATGATGTTGGGTGAGGTTGAAGAGGTTAGAGATATTGCTCGTGATGTTGTTAAGATCTTTGGGGAATATAGTGTTACTGATTTTATTTGGCCTTTGAAGTTTTTTAAAAAATTTGGGAACTATGAGAAGAGAATTGATGATATTTTTAACAAGTATGATCCCATCATTGAAAAGGTTATCAAGAAAAGACAAGAGATTGTGAACAAAAGAAGAAGTGGAGAAATTCATGAGGGTGAGGTGGAGAGTGTAGTTTTTCTTGATACTTTGCTTGAATTTGCTCAAGATGAGACCATGGAGATCAAAATTACAAAGGAACAAATCAAGGGTCTTGTTGTGGATTTCTTCTCTGCTGGCACAGACTCCACAGCTGTGGCAACAGAATGGACTTTGGCCGAGCTCATCAATAATCCAAGGGTGTTGAAGAAAGCTCAAGAGGAGATGGAATCTGTTGTTGGAAAAGATAGACTTGTTGACGAATCGGATGTTCAAAATCTTCCTTACATTAAAGCCATGGTGAAGGAGGCATTCCGCTTGCATCCACCACTACCATTGGTTACGAGAAAATGTACCGAAGAGTGTGAAATTAACGGCTATATGATCCCAAAGGGAGCATTAATACTTTTCAATGTATGGCAAGTTGGAAGAGACCCAAAATATTGGGAGAAGCCATTGGAATTCCGTCCAGAGAGGTTCTTAGAAAATGCTGGTGAAGGTGAAGCAGCTGCAGTTGATCTTAGGGGTCAACATTTCACACTTCTACCATTTGGGTCTGGAAGGAGAGTGTGTCCTGGAGTAAATTTGGCTATAGCGGGAATGGCCACACTACTTGCATCTATTATCCAGTGCTTTGATCTGCAAGTACCAGGTCCACATGGACAAATATTGAAAGGCAGTGATGCTAAAGTTAGCATGGATGAGAGACCTGGTCTCACAGTTCCAAGAGCACATAATCTCATATGTGTTCCAGTTGCAAGAGCTGGTGTTGCAGCTCAACTCCTTTCCTCCTAA 1578 0.398 MLIEIAVALFIIALFIHLRPTPSAAKSKTLRHLPNPPSPKHRLPFIGHLHLLDNPLLHHSLIRLGERYGPLYSLYFGSVPTIVASTPDLFKLFLQTHEAISFNTRFQTSAIKRLTYDNSVAMVPFGPYWKFIRKLIMNDLLNASTVNKLRPLRSKEIHKFLNVMAKSAETQQPLNITEELLKWTNSTISTMMLGEVEEVRDIARDVVKIFGEYSVTDFIWPLKFFKKFGNYEKRIDDIFNKYDPIIEKVIKKRQEIVNKRRSGEIHEGEVESVVFLDTLLEFAQDETMEIKITKEQIKGLVVDFFSAGTDSTAVATEWTLAELINNPRVLKKAQEEMESVVGKDRLVDESDVQNLPYIKAMVKEAFRLHPPLPLVTRKCTEECEINGYMIPKGALILFNVWQVGRDPKYWEKPLEFRPERFLENAGEGEAAAVDLRGQHFTLLPFGSGRRVCPGVNLAIAGMATLLASIIQCFDLQVPGPHGQILKGSDAKVSMDERPGLTVPRAHNLICVPVARAGVAAQLLSS 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04039 525 Pfam Cytochrome P450 36 478 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 SUPERFAMILY Cytochrome P450 30 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PANTHER STEROID 21-HYDROXYLASE-RELATED 9 505 - -
Trre10g04039 525 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS P450 superfamily signature 452 463 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS P450 superfamily signature 443 452 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 445 454 IPR017972 GO:0005506|GO:0016705
Trre10g04039 525 PRINTS E-class P450 group I signature 452 475 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 442 452 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 PRINTS E-class P450 group I signature 399 423 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g04039 525 FunFam Predicted protein 305 510 - -
Trre10g04039 525 Gene3D Cytochrome P450 25 514 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04039 Trre-Chr10 49635318 49638149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04039 32 520 Cytochrome P450 AT5G06900 37.400 2.26e-112 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04039 - - ag:BAA76380 839.336