Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04034 ATGAAAGAAAACATTGATCTTGAAGTGAAAACTTATGCAGAATATGAATCTGAAGTTACAAGCCAAGTTGCTTCTAATATATCAACTCAAGAAACCTCTTCCAACATATCAAATCCAATAGGGATTAATCTTAATCATCCTAATTTAGATGATAATGATATATCTCTTGACTTAACTCTCAACTTGAAGAACAATGAGTTAAGGGATTCAAATTCAATAGGATTCTCAATCTCAAGCACTTCTGAGAGCAGCAATGTACCTGTATCGGCAACAATTCAACGAGTTTTCTCATGCAATTACTGTCAGAGAAAGTTTTTCAGCTCTCAAGCTCTTGGTGGACACCAAAATGCACATAAGAGAGAAAGAACATTAGCAAAAAGAGCTATGAGAATGGGAATTTTTTCTGATAGGTATAATGCTAGTTTAGCATCTTTACCTTTGCATGGATCTTTTAGAACATTAGGAATAAAAGCACACTCTTCAATGCACTATGGTTTCTCAGCACCAACAACAATTCGGCCTCATAATCATCATGAGGTGAAAATAAATAATACGAAATTCGAACAAGGGTGTGTCGGTTTTCCGATATACTTGGAAGATGAGGAGTCAGAGTTGTTATGGCCTGGTAGCTTTCGACAGGCGTCCGAGGCAGGTGATGGACAACAGAATTTCATACTCACTGAAGTGAATCCATGTGTAGACAGAGAAAAATCTACGCCTGATTTGACATTGAAACTTTGA 741 0.3671 MKENIDLEVKTYAEYESEVTSQVASNISTQETSSNISNPIGINLNHPNLDDNDISLDLTLNLKNNELRDSNSIGFSISSTSESSNVPVSATIQRVFSCNYCQRKFFSSQALGGHQNAHKRERTLAKRAMRMGIFSDRYNASLASLPLHGSFRTLGIKAHSSMHYGFSAPTTIRPHNHHEVKINNTKFEQGCVGFPIYLEDEESELLWPGSFRQASEAGDGQQNFILTEVNPCVDREKSTPDLTLKL 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04034 246 ProSitePatterns Zinc finger C2H2 type domain signature. 98 118 IPR013087 -
Trre10g04034 246 SUPERFAMILY beta-beta-alpha zinc fingers 93 123 IPR036236 -
Trre10g04034 246 Gene3D Classic Zinc Finger 76 141 - -
Trre10g04034 246 ProSiteProfiles Zinc finger C2H2 type domain profile. 96 123 IPR013087 -
Trre10g04034 246 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 30 175 IPR044246 GO:0009788
Trre10g04034 246 FunFam Zinc finger protein 2 74 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04034 Trre-Chr10 49615597 49616337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04034 78 246 C2H2 Transcription Factor Family AT1G66140 48.744 1.90e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre10g04034 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04034 - - cam:101493910 305.449