Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04032 ATGAAGAAAAACACCAACAACATCATGCTCATAAACCTCTTAACTTTTTTCTTATTCTTCTCCTTCTTTACCTTCTTAACTCACTCCCAAAACGACGACGCTTCAGTTATGCAAACACTCAAAACAAATCTCAACCCACCAATTTCACTTGGTTGGTCCGACCCGGATCCATGTAAATGGAAACATGTTATTTGCTCAGACGACAAACGGGTTACCCGAATCCAAATCGGTCGTCAGAATCTTCAAGGTACACTGCCTCAAACCCTTCGAAACCTAACTCAGTTACAACATTTGGAGCTTCAATTCAACAATTTCTCTGGTCCTCTTCCGAGTTTACACAATTTAAACTCTCTTCAAGTTTTCATGGCGAGTGGTAACAGTTTTTCAGTAATTCCGGATGATTTTTTCGCCAATATGACTCAGCTTGAAACTGTAGAGATCGATGATAACCCTTTTGAGCCTTGGGAGATTCCTATGTCTTTAAAAGATGCTTTGTCACTACGGAATTTTTCTGCGAATCATGCTAATGTTAAGGGTAAGTTACCCGATTTTTTTAGTGTTGACGTGTTTCCTAGCTTGACCCTTTTGCATTTAGCTTTCAATAATCTTGAGGGTGTGTTGCCAAAGAGCTTTTCTCTGTTAAATGTTCAGTCTTTGTGGTTGAATGGTCAAAAGAGTGATGCTAAGCTTAGTGGGTCAGTTGATGTTTTGCAGAATATGACTTCTTTGAGTGAAGTTTGGTTGCATGATAATAGGTTTAGTGGTCCTTTGCCTAGTTTTGAAGGGTTTGAAAGTTTAAAAGTTTTGAGTTTAAGGGATAACTCTTTCACTGGTATTGTTCCTAGTTCATTGGTTAGCCTTAAGTCACTTAAAGTTGTCAACTTGACCAATAACTTGTTTCAGGGTCCAATGCCGGTTTTTGGTGCTGGTGTTGAGGTTGATAATATTAAGGATTCTAATAGGTTTTGTTTGTCTAGTCCTGGTGATTGTGATCCTAGGGTGCAGGTTCTTCTTTCTGTTGTTGGGGATATGGGTTATCCTTCAAGGTTTGCTGATGATTGGAAGGGGAATGACCCTTGTGCTGATTGGATTGGGATTACTTGTAGTGATGGGAACATTAGTTTTGTTAATTTTCAAAAGATGGGTCTCAGTGGTGTGATATCTCCCGAGTTTGCTAAGCTTAAATCGCTACAAAGACTTATTCTTTCTGATAACAATCTTACCGGTTTGATTCCGAATGAGCTTACAACTTTGCCTATGCTAACTCAATTGAATGTTGCTAACAATCATATCTTTGGAAAAGTACCGAGTTTTAGGAGCAATGTTATTGTGACTACTAGTGGGAACATTGATATAGGGAAGGATAAAAGCAGCCTTGCCCCTCAGGGTTCGGTGTCTTCTAATGGTACCGATGCAAGTGGTGGAAATGGTGGGAGTAATGGAAATGATGCCAAAAAGTCTTCTTCTCATGTAGGATTGATCGTGTTTGCTGTGGTTGGGGCTGTTTTTGTTGCATCTTTGATTGGTTTCTTGGTTTTCTGCTTGCTTAGAATGAAGCAAAAGAAGTTAAGTAGGGTTCAAAGTCCGAATGCACTAGTTATTCACCCTCGGCATTCTGGATCAGATAATGAAAGTGTGAAGATAACGGTTGCAGGCTCAAGTGTCAGTGTTGGAGGTATGAGTGAAGCCCATGCTGTTCCCAATAGTGAAATGGGAGATATTCAAATGGTTGAAGCGGGAAACATGGTTGCAGATTTTGGTCTTGTGCGTCTCGCTCCAGAAGGGAAAGCCTCAATTGAAACAAGAATTGCAGGAACTTTCGGATATTTGGCTCCAGAATATGCAGTTACCGGCCGTGTGACAACTAAAGTTGACGTGTTCAGCTTTGGTGTAATATTGATGGAGCTGATAACCGGAAGAAAAGCGCTTGACGATAGCCAACCTGAGGATAGCATGCACCTTGTAGCTTGGTTCCGCAAAATGTACATAGATAAGGACTCGTTCCGCAAAGCGATTGATCCGACAATTGATATCAATGAAGAAATACTTGCTAGTGTTCACACTGTTGCAGAGTTAGCTAGTCACTGCAGTGCAAGGGAGCCATATCAAAGGCCTGATATGGGTCATGCGGTTAACGTGCTTTCTTCTCTTGTAGAACAATGGAAACCGTCTGATACAAACTCCGAAGATATCTATGGAATTGACCTTGACTTATCTTTACCACAAGCTCTCAAGAAGTGGCAGGCTTATGAAGGTGCAAGTCAATTGGAGTCATCATCTTCTTCGCTTCTTCCGAGTTTGGATAACACACAAACAAGTATACCTAATCGCCCATATGGATTTGCCGATTCTTTCACATCGGCAGATGGTAGGTGA 2376 0.4095 MKKNTNNIMLINLLTFFLFFSFFTFLTHSQNDDASVMQTLKTNLNPPISLGWSDPDPCKWKHVICSDDKRVTRIQIGRQNLQGTLPQTLRNLTQLQHLELQFNNFSGPLPSLHNLNSLQVFMASGNSFSVIPDDFFANMTQLETVEIDDNPFEPWEIPMSLKDALSLRNFSANHANVKGKLPDFFSVDVFPSLTLLHLAFNNLEGVLPKSFSLLNVQSLWLNGQKSDAKLSGSVDVLQNMTSLSEVWLHDNRFSGPLPSFEGFESLKVLSLRDNSFTGIVPSSLVSLKSLKVVNLTNNLFQGPMPVFGAGVEVDNIKDSNRFCLSSPGDCDPRVQVLLSVVGDMGYPSRFADDWKGNDPCADWIGITCSDGNISFVNFQKMGLSGVISPEFAKLKSLQRLILSDNNLTGLIPNELTTLPMLTQLNVANNHIFGKVPSFRSNVIVTTSGNIDIGKDKSSLAPQGSVSSNGTDASGGNGGSNGNDAKKSSSHVGLIVFAVVGAVFVASLIGFLVFCLLRMKQKKLSRVQSPNALVIHPRHSGSDNESVKITVAGSSVSVGGMSEAHAVPNSEMGDIQMVEAGNMVADFGLVRLAPEGKASIETRIAGTFGYLAPEYAVTGRVTTKVDVFSFGVILMELITGRKALDDSQPEDSMHLVAWFRKMYIDKDSFRKAIDPTIDINEEILASVHTVAELASHCSAREPYQRPDMGHAVNVLSSLVEQWKPSDTNSEDIYGIDLDLSLPQALKKWQAYEGASQLESSSSSLLPSLDNTQTSIPNRPYGFADSFTSADGR 791
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04032 791 Gene3D Ribonuclease Inhibitor 30 330 IPR032675 -
Trre10g04032 791 FunFam Leucine-rich repeat receptor-like kinase 332 455 - -
Trre10g04032 791 MobiDBLite consensus disorder prediction 757 780 - -
Trre10g04032 791 MobiDBLite consensus disorder prediction 454 484 - -
Trre10g04032 791 Pfam Leucine rich repeat 259 299 IPR001611 GO:0005515
Trre10g04032 791 Pfam Leucine rich repeat 390 431 IPR001611 GO:0005515
Trre10g04032 791 SUPERFAMILY L domain-like 53 438 - -
Trre10g04032 791 Gene3D Transferase(Phosphotransferase) domain 1 564 737 - -
Trre10g04032 791 PANTHER OSJNBA0070M12.3 PROTEIN 15 583 - -
Trre10g04032 791 SMART serkin_6 485 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04032 791 Gene3D Ribonuclease Inhibitor 332 456 IPR032675 -
Trre10g04032 791 ProSiteProfiles Protein kinase domain profile. 335 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04032 791 FunFam Receptor-like kinase TMK4 31 328 - -
Trre10g04032 791 Pfam Protein kinase domain 582 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04032 791 SUPERFAMILY Protein kinase-like (PK-like) 583 723 IPR011009 -
Trre10g04032 791 MobiDBLite consensus disorder prediction 757 791 - -
Trre10g04032 791 SMART LRR_typ_2 115 138 IPR003591 -
Trre10g04032 791 SMART LRR_typ_2 190 213 IPR003591 -
Trre10g04032 791 SMART LRR_typ_2 394 417 IPR003591 -
Trre10g04032 791 SMART LRR_typ_2 263 286 IPR003591 -
Trre10g04032 791 Pfam Leucine rich repeat N-terminal domain 31 66 IPR013210 -
Trre10g04032 791 Pfam Leucine rich repeat N-terminal domain 334 369 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04032 Trre-Chr10 49566873 49569912 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04032 74 717 Receptor kinase-like Gene Family AT1G28440 27.131 1.12e-32 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Trre10g04032 Pkinase 2.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04032 K00924 - gmx:100789646 795.038