Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04021 ATGTGCTCTTCTTCCTCCAGAAAAATGAATGAGGGTACGCAACAGGCCCAAGGGGAAGTTCACCTGCCAAGGTGGCTTGAGGATTATTTGGGGCAAAAGTTCTTTGACTCATGTCCTGCTCATTCGAAAGAGAGGAATTTATACTGCATAAATTGCAAATTATCTGCTTGTAAGCATTGTATGTCATCAGGATCTCATGAAGATCACCAGATACTGAGAATATATAAGAATGGTTACAAGGATGGTGTCTGCCTGGATGCTATGGAGACATATATCGACTGCTCCCAGATCCAGTCGTTCAAATGCAACAACCTAAGAATTCTGAATCGTAGTCCGCGTTGTGGATCAACATTGGATGATGCAGTATCATGCAACAATGACAGCAGAAAATCGAAAGCAGCTAAAGCATACCCGTACTGCTCCATAACTTGCATGGTGAAAGCTGCAAGGAAGTCTTCAATTCCTCCCACTGTTTCCATCCAGGCTCCTCCTCCTCCTCCTCCTCATGGATCACTGGGGGAAATTTCTGAGCCCTCTAAGCGTAAGAGGAAACGAAAAGGAATTCCACATAGAGCTCCGTTGTTCTAA 588 0.4439 MCSSSSRKMNEGTQQAQGEVHLPRWLEDYLGQKFFDSCPAHSKERNLYCINCKLSACKHCMSSGSHEDHQILRIYKNGYKDGVCLDAMETYIDCSQIQSFKCNNLRILNRSPRCGSTLDDAVSCNNDSRKSKAAKAYPYCSITCMVKAARKSSIPPTVSIQAPPPPPPHGSLGEISEPSKRKRKRKGIPHRAPLF 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04021 195 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 194 - -
Trre10g04021 195 MobiDBLite consensus disorder prediction 158 172 - -
Trre10g04021 195 ProSiteProfiles Zinc finger B-box type profile. 38 74 IPR000315 GO:0008270
Trre10g04021 195 Gene3D Classic Zinc Finger 37 76 - -
Trre10g04021 195 MobiDBLite consensus disorder prediction 155 195 - -
Trre10g04021 195 Pfam PLATZ transcription factor 77 146 IPR006734 -
Trre10g04021 195 Pfam B-box zinc finger 37 72 IPR000315 GO:0008270
Trre10g04021 195 SUPERFAMILY B-box zinc-binding domain 36 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04021 Trre-Chr10 49456267 49458529 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre10g04021 PLATZ 2.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04021 - - tpra:123919466 301.597