Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04020 ATGTCTTTCTCGACGATCGATGTTAGCAAGAAGAGAAAACGATGGAATAAGATTTTTAGGTTACAATCATTCGCTGATCCTGGTTGTCCAATTACACCTTCAGGTTCTTTCCGTAAAAATGTTCGATTGTTTCTTCAAGAAGCTGCTGAACTTGAAGATTATACGGTTATGGGAAATCCTCTTTGGTGCACTTTTCTGAATCATGATAAGACAAATCTTATGGCTCCTTTCTATACTCTTGAAGAAGATGTTTATAACTCTTCTCATCCTTTCTGTGATCATTGCCGTTGTGTAGGTTGGAGTGGACATTTTGTATCAAAGAGAAGGTACCATTTCATAATTCCAATGGATAATGAATGGCATAAACCCTTAAATGAAGAAGCTCTTGATAATCAAAGTCATCTGTTACATGGTGTGATTCATTGCAATGGTTATGGCCATTTGGTATGTCTTAATGGCATTGAAGGTGGTTCCAAATTTCTTAGTGGAAGAGAAATCATGGAATTGTGGGACAGAATTTGCACCAATCTTAGAGCAAGGCAAATTGCAGTGGAAGATACTTCAAGGAAAAGATCAATGGATCTTAGATTACTTCATGGAGTTGCTTATGGTCACTCTTGGTTTGGTAGGTGGGGCTATAAATTCTGTCGCGGAAGCTTTGGTGTGACAGAACAAAACTATTATGAAGCAATGGAAATTCTTGGTTCATTAGTGCTTGATGATATTGTAAGAGATTTGAGTAAGACAAAGTATCATAAAGATATCAAACAAATGATTCGTTTCTATAGAGATATGAGTGAAACTCGAATAGTCACAATAAGGGATCTTCTAAGATTCATGCTCACTGTCAAGTCTCGTCGTACCTCGAAGATAACAGTCACTTATTCTTCGTCTAATGCTGCTTCTTCTGCTGATTCACCTCCTTGTTCTAATTCAGCATGTTTGTCGAGAAATTCAACCAAACATGCACTTTCAAGTAGATCAAATTCCATGAGTAAGGAAAAATCAGCAAGGTATAAGAAGTTCAGCACTGCAGTGGCGAATATGGATAGTAGATGGCCAACAAGGAGACTTGAATTCGCAGCTCAAGTGATTGTTGATGCATTAAAAGAAGACAAAGCTATGAAAGCAGGCTCAAGTGGCATGACAAGGCAAGATGTGAGGGATGCAGCTAGGCTTCACATTGGTGATACAGGTTTACTTGATTATGTGCTGAAATCACTCAACAATGTGATTGTTGAAAACTATGTCGTTCGCCGCATGGTTAACTCTTCATCAAGGATCCTTGAGTATACTATTCATGAGCTTGGAAAAGAGTTCAAAGCACCTGAAGTAGAACATAGTGTAGTGACACTTGTAGATAATCCTCAAGTGGAGTCATCAACACCATCATCATCATCTTCATCTTTTGTTCCTGGTAATGATGTTTACAGTGATGTAGTTTATCTCTACAAGAATGTGTTACTAGGTTATCCAGATTCAGAGCCAGTTGAATTAGCAGTTCAGACAATTCTTGACTGCAGACACTTTGTGAAAGAGTGGAAATTGAGAGATGAAATGGAGCAAGTTTTGACATTTATTTGCCGTTTGAAACCGAATTTCATCGAGAATAAGTCTGATTTAAAAGGACCATCTTGTGGTGAGATTGTAACTGTTCCACTGCATGCAACAGTTAAAGATTTAAAGCAAGCTGCTGAGGCTGCATTAAGGGACACATACTGCATAGCTGAAAGACTAATTGTAACTGATATCAAAGAATTGATGGATGTGGATGATGAAGAAGTTATTTTTGGACAGATTGAATCAGGTGTTAAGCTTTGTGTTAGGGGAATTGGAATAGATTTATGCACACCATTGAAGTATCAAGGAGGTTCTGATAATTGGAAGGTGAGGTGTGAGTGTGGAGCACAAGATGATGATGGTGAGAGAATGATTGCTTGTGATATTTGTGAGGTATGGCAGCATACAAGATGTTGTGGAATAGATGATTCTGAGACAGTTCCACCATTGTTTGTTTGTTCTGGATGTTGTGATTCACTTGTGCCACCAAGGATTGAATCTAGCTGCTATGGTATGGTCGATTGTGCTGATGCTTTTCTGGTTTCACCTGAGGCTGCTCATTTGCTTGAGTATGGTTATGGCTATTGA 2148 0.385 MSFSTIDVSKKRKRWNKIFRLQSFADPGCPITPSGSFRKNVRLFLQEAAELEDYTVMGNPLWCTFLNHDKTNLMAPFYTLEEDVYNSSHPFCDHCRCVGWSGHFVSKRRYHFIIPMDNEWHKPLNEEALDNQSHLLHGVIHCNGYGHLVCLNGIEGGSKFLSGREIMELWDRICTNLRARQIAVEDTSRKRSMDLRLLHGVAYGHSWFGRWGYKFCRGSFGVTEQNYYEAMEILGSLVLDDIVRDLSKTKYHKDIKQMIRFYRDMSETRIVTIRDLLRFMLTVKSRRTSKITVTYSSSNAASSADSPPCSNSACLSRNSTKHALSSRSNSMSKEKSARYKKFSTAVANMDSRWPTRRLEFAAQVIVDALKEDKAMKAGSSGMTRQDVRDAARLHIGDTGLLDYVLKSLNNVIVENYVVRRMVNSSSRILEYTIHELGKEFKAPEVEHSVVTLVDNPQVESSTPSSSSSSFVPGNDVYSDVVYLYKNVLLGYPDSEPVELAVQTILDCRHFVKEWKLRDEMEQVLTFICRLKPNFIENKSDLKGPSCGEIVTVPLHATVKDLKQAAEAALRDTYCIAERLIVTDIKELMDVDDEEVIFGQIESGVKLCVRGIGIDLCTPLKYQGGSDNWKVRCECGAQDDDGERMIACDICEVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRIESSCYGMVDCADAFLVSPEAAHLLEYGYGY 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04020 715 CDD PHD_MMD1_like 632 676 - -
Trre10g04020 715 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 686 - -
Trre10g04020 715 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 680 IPR013083 -
Trre10g04020 715 SMART PHD_3 631 677 IPR001965 -
Trre10g04020 715 SUPERFAMILY FYVE/PHD zinc finger 624 682 IPR011011 -
Trre10g04020 715 MobiDBLite consensus disorder prediction 296 332 - -
Trre10g04020 715 ProSitePatterns Zinc finger PHD-type signature. 632 676 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04020 Trre-Chr10 49452515 49455208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04020 8 682 PHD Transcription Factor Family AT5G22260 32.365 1.39e-117 366
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04020 K26271 - gmx:100797388 1057.36