Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04019 ATGGAGTTTGGATTTTTTCGTGGTCTGCCCGAGAATCTATTCATACTGGACATCATAGGACAAATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGGGACAGTCAGACCTATCGCATGGTCTACAAGCGTACTCCTATTGCTCTCCGGTATCTAAAATCAACCTTTGTCGTTGATCTTCTTGGATGTCTGCCATGGGACCTCATCTACAAGGCTTGTGGACGGCGAGAAGAAGTGAGGTACCTATTGTGGATCAGATTATATAGGGCGCAGAGGGTCGTACAATTTTTCAGAAATTTGGAGAAAGACATACGTGTCAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGCATATTCTACTATTTGGCTACTACACTTCCTGAATCCCAAGAGGGTTACACATGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAGGTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCATTGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGATATGGTTCTCGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCGAAAACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATCAACTCGGTAGGGAAATCCGTGAACAAATAAAGGGCCATGTGCGCCTGCAATTTGAGAGCAGCTACACTGATGCTTCTGTCCTTCAGGACATTCCCATTTCTATTCGATCTAAGATATCTCAATCGTTGTATTTGCCATACATAGAGAACGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTACTAGGCTCCATGAGGAATTCTTTCTTCCAGGGGAAGTTATAATGCAACAAGGATACGCTGTAGATCAACTATATTTTGTCTGTGATGGTCAGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTATTTCACTTTTAGAGCACAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGCGTTTGTGAACTGTGTAGAGTCCTGCGGCTCGATAAACAATCATTTTCAAATATCCTAGAAATATACTTTTATGACGGGAAGAAAGTATTAGACAACCTTATAGAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAACAGAGCAGCTTATGATGGTGATATGTATCAGCTAAAGAGTTTGATTCGAGCTGGAGCTGATCCGAAGAAGACAGATTATGACGGGAGATCACCTTTGCATCTTGGAGCATGCAGAGGATATGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAGTGGAAACGATCGGATTGCTGCTTTACTTGTTAGTAAAGGGGCCTCTATGGAGATAGATGATGGTGGTAGTTTTTTATGCACTGCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCGAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTATCAAAGACCGATGGGGAAATACACCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTGATAAAGCTGCTAGAAGATGCAAAATCTGCTCAATTGACAGAATTTCCTTTTCCTCAAGAAATTACAGATAAAGTACGTCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAACAAAGAAGAAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAACTAATCAAAACAGCTGCAGAACAGATAGGATTTTCTAGTGACTGTTGTATTTTATCAGAAGATGCCGGTAAAATTATTGATGTCGGCATGATTAAGGATGATCAGAAGCTGTATTTAGTCGATGAAACGCATTAA 2181 0.3961 MEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSTFVVDLLGCLPWDLIYKACGRREEVRYLLWIRLYRAQRVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSRFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNQLGREIREQIKGHVRLQFESSYTDASVLQDIPISIRSKISQSLYLPYIENVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMQQGYAVDQLYFVCDGQLEEVGIAEDGSEETISLLEHNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILEIYFYDGKKVLDNLIEGKESIRGKQLESDITFHIGKLESELALKVNRAAYDGDMYQLKSLIRAGADPKKTDYDGRSPLHLGACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGNDRIAALLVSKGASMEIDDGGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFIKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVRPKKCTVFPFHPWDPKEQRRNGIVLWVPHTIEELIKTAAEQIGFSSDCCILSEDAGKIIDVGMIKDDQKLYLVDETH 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04019 726 Pfam KHA, dimerisation domain of potassium ion channel 652 721 IPR021789 -
Trre10g04019 726 CDD CAP_ED 302 408 IPR000595 -
Trre10g04019 726 SUPERFAMILY Ankyrin repeat 452 630 IPR036770 -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat profile. 542 574 IPR002110 GO:0005515
Trre10g04019 726 PANTHER POTASSIUM CHANNEL AKT1 1 723 IPR045319 GO:0005249|GO:0006813
Trre10g04019 726 SMART ANK_2a 542 571 IPR002110 GO:0005515
Trre10g04019 726 SMART ANK_2a 608 638 IPR002110 GO:0005515
Trre10g04019 726 SMART ANK_2a 511 540 IPR002110 GO:0005515
Trre10g04019 726 SMART ANK_2a 575 604 IPR002110 GO:0005515
Trre10g04019 726 SMART ANK_2a 478 507 IPR002110 GO:0005515
Trre10g04019 726 FunFam Potassium channel KAT2 290 427 - -
Trre10g04019 726 ProSiteProfiles cAMP/cGMP binding motif profile. 302 405 IPR000595 -
Trre10g04019 726 Gene3D - 442 540 IPR036770 -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat region circular profile. 511 542 - -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat profile. 575 607 IPR002110 GO:0005515
Trre10g04019 726 Pfam Ankyrin repeats (3 copies) 453 541 IPR002110 GO:0005515
Trre10g04019 726 Pfam Ankyrin repeats (3 copies) 548 629 IPR002110 GO:0005515
Trre10g04019 726 ProSiteProfiles Ankyrin repeat region circular profile. 542 573 - -
Trre10g04019 726 Gene3D - 541 638 IPR036770 -
Trre10g04019 726 SMART cnmp_10 302 420 IPR000595 -
Trre10g04019 726 SUPERFAMILY Voltage-gated potassium channels 8 227 - -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat profile. 511 543 IPR002110 GO:0005515
Trre10g04019 726 FunFam Potassium channel SKOR 1 227 - -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat region circular profile. 575 607 - -
Trre10g04019 726 Pfam Cyclic nucleotide-binding domain 322 406 IPR000595 -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat region circular profile. 478 510 - -
Trre10g04019 726 ProSiteProfiles KHA domain profile. 653 726 IPR021789 -
Trre10g04019 726 Gene3D Jelly Rolls 286 423 IPR014710 -
Trre10g04019 726 SUPERFAMILY cAMP-binding domain-like 230 419 IPR018490 -
Trre10g04019 726 ProSiteProfiles Ankyrin repeat profile. 478 510 IPR002110 GO:0005515
Trre10g04019 726 Pfam Ion transport protein 12 227 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre10g04019 726 Gene3D Helix hairpin bin 229 285 - -
Trre10g04019 726 Gene3D - 3 228 - -
Trre10g04019 726 PRINTS EAG/ELK/ERG potassium channel family signature 218 227 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04019 726 PRINTS EAG/ELK/ERG potassium channel family signature 17 27 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04019 726 PRINTS EAG/ELK/ERG potassium channel family signature 126 136 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04019 726 PRINTS EAG/ELK/ERG potassium channel family signature 174 191 IPR003938 GO:0005249|GO:0006813|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04019 Trre-Chr10 49442252 49448638 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04019 549 628 Ion Channels AT5G37500 34.314 1.29e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04019 K21867 - gmx:100814385 1277.31