Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04018 ATGATCGGGAAGAAGGAGATGAAGGAAGAGACTGAAGAAGAGAAAATCATGAGTAATAATAACAATCAAACGACGCCGTGTTCGAGATCTTCTTCTACACCTTCATGTTCTACAGATGAAGGAGAATATGAAGTTCAGGATCTTCGAGATCGATTGAAATCATCAAGAGGAAGCATGTTCAATTTGATAGAGAAGGAGTTAGGGCTAAGGATCGGTTGGAGAAAGTTCAGTCGCGGAGCTCTTTTTCACGAATCCGTTATTATTAATCCTGATAACAGGTGGTATCGAGCATGGATCAAATTCATATTATTATGGGCAGTATACTCATCTTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGTCTGCCCGAGAATCTATTCATACTGGACATCATAGGACAAATAGCTTTTCTTGTGGACATTGTTTTGCAGTTCTTTGTTGCTTATAGGGACAGTCAGACCTATCGCATGGTCTACAAGCGTACTCCTATTGCTCTCCGGTATCTAAAATCAACCTTTGTCGTTGATCTTCTTGGATGTCTGCCATGGGACCTCATCTACAAGGCTTGTGGACGGCGAGAAGAAGTGAGGTACCTATTGTGGATCAGATTATATAGGGCGCAGAGGGTCGTACAATTTTTCAGAAATTTGGAGAAAGACATACGTGTCAATTACATTATTGCTCGGATTGTGAAACTTTTAGTTGTTGAACTCTACTGCACCCACACAGCAGCCTGCATATTCTACTATTTGGCTACTACACTTCCTGAATCCCAAGAGGGTTACACATGGATAGGAAGTTTGAAACTGGGTGACTATAGTTATTCAAGGTTCAGAGAAATTGATCTTTGGAAGCGCTACACAACATCATTGTATTTTGCTATTGTTACAATGGCTACTGTTGGCTATGGAGATATACATGCAGTAAATTTGAGGGAGATGATATTCATAATGATTTATGTTTCATTTGATATGGTTCTCGGTGCTTACTTGATCGGTAACATGACAGCCTTGATAGTCAAGGGATCGAAAACTGAAAAGTTTAGGGACAGGATGACAGATCTGATGAAATATATGAATAGAAATCAACTCGGTAGGGAAATCCGTGAACAAATAAAGGGCCATGTGCGCCTGCAATTTGAGAGCAGCTACACTGATGCTTCTGTCCTTCAGGACATTCCCATTTCTATTCGATCTAAGATATCTCAATCGTTGTATTTGCCATACATAGAGAACGTTTCTCTTTTTAAAGGATGCTCTTCAGAATTCATCAATCAGATTGTTACTAGGCTCCATGAGGAATTCTTTCTTCCAGGGGAAGTTATAATGCAACAAGGATACGCTGTAGATCAACTATATTTTGTCTGTGATGGTCAGCTGGAGGAAGTAGGCATAGCTGAAGATGGGTCTGAAGAAACTATTTCACTTTTAGAGCACAACAGTTCATTTGGAGAAATATCTATTCTTTGCAACATTCCTCAGCCATATACTGTCCGCGTTTGTGAACTGTGTAGAGTCCTGCGGCTCGATAAACAATCATTTTCAAATATCCTAGAAATATACTTTTATGACGGGAAGAAAGTATTAGACAACCTTATAGAGGGAAAAGAGTCTATTAGAGGTAAGCAATTGGAGTCAGACATCACATTTCATATTGGAAAGCTAGAATCTGAACTTGCTTTGAAGGTCAACAGAGCAGCTTATGATGGTGATATGTATCAGCTAAAGAGTTTGATTCGAGCTGGAGCTGATCCGAAGAAGACAGATTATGACGGGAGATCACCTTTGCATCTTGGAGCATGCAGAGGATATGAAGATATCACGCTTTTCCTTATTCAAGAAGGTGTAGACATCAACATCAAAGATAACTTTGGGAACACACCGCTACTTGAAGCAGTTAAGAGTGGAAACGATCGGATTGCTGCTTTACTTGTTAGTAAAGGGGCCTCTATGGAGATAGATGATGGTGGTAGTTTTTTATGCACTGCAGTTGCAAGAGGAGATTCGGATTATCTTAAAAGGCTTTTATCTAATGGAATGGATCCTAACTTGAAAGATTATGACTATCGAACCCCTCTACATGTTGCTGCATCTGAAGGTTTAATCTTCATGGCGAAGTTGTTATTAGAAGCCGGAGCTAGTGTTTTTATCAAAGACCGATGGGGAAATACACCGCTTGATGAAGCTCGGATGAGTGGAAATAAGAATCTGATAAAGCTGCTAGAAGATGCAAAATCTGCTCAATTGACAGAATTTCCTTTTCCTCAAGAAATTACAGATAAAGTACGTCCAAAGAAGTGCACAGTGTTCCCTTTCCACCCATGGGATCCAAAAGAACAAAGAAGAAATGGAATAGTATTATGGGTTCCACACACCATTGAAGAACTAATCAAAACAGCTGCAGAACAGATAGGATTTTCTAGTGACTGTTGTATTTTATCAGAAGATGCCGGTAAAATTATTGATGTCGGCATGATTAAGGATGATCAGAAGCTGTATTTAGTCGATGAAACGCATTAA 2523 0.3964 MIGKKEMKEETEEEKIMSNNNNQTTPCSRSSSTPSCSTDEGEYEVQDLRDRLKSSRGSMFNLIEKELGLRIGWRKFSRGALFHESVIINPDNRWYRAWIKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRDSQTYRMVYKRTPIALRYLKSTFVVDLLGCLPWDLIYKACGRREEVRYLLWIRLYRAQRVVQFFRNLEKDIRVNYIIARIVKLLVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLGDYSYSRFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNLREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMTDLMKYMNRNQLGREIREQIKGHVRLQFESSYTDASVLQDIPISIRSKISQSLYLPYIENVSLFKGCSSEFINQIVTRLHEEFFLPGEVIMQQGYAVDQLYFVCDGQLEEVGIAEDGSEETISLLEHNSSFGEISILCNIPQPYTVRVCELCRVLRLDKQSFSNILEIYFYDGKKVLDNLIEGKESIRGKQLESDITFHIGKLESELALKVNRAAYDGDMYQLKSLIRAGADPKKTDYDGRSPLHLGACRGYEDITLFLIQEGVDINIKDNFGNTPLLEAVKSGNDRIAALLVSKGASMEIDDGGSFLCTAVARGDSDYLKRLLSNGMDPNLKDYDYRTPLHVAASEGLIFMAKLLLEAGASVFIKDRWGNTPLDEARMSGNKNLIKLLEDAKSAQLTEFPFPQEITDKVRPKKCTVFPFHPWDPKEQRRNGIVLWVPHTIEELIKTAAEQIGFSSDCCILSEDAGKIIDVGMIKDDQKLYLVDETH 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04018 840 Gene3D - 98 342 - -
Trre10g04018 840 PANTHER POTASSIUM CHANNEL AKT1 66 837 IPR045319 GO:0005249|GO:0006813
Trre10g04018 840 ProSiteProfiles cAMP/cGMP binding motif profile. 416 519 IPR000595 -
Trre10g04018 840 Pfam KHA, dimerisation domain of potassium ion channel 766 835 IPR021789 -
Trre10g04018 840 Pfam Cyclic nucleotide-binding domain 436 520 IPR000595 -
Trre10g04018 840 Gene3D Jelly Rolls 400 537 IPR014710 -
Trre10g04018 840 ProSiteProfiles Ankyrin repeat region circular profile. 625 656 - -
Trre10g04018 840 MobiDBLite consensus disorder prediction 17 40 - -
Trre10g04018 840 Gene3D Helix hairpin bin 343 399 - -
Trre10g04018 840 SUPERFAMILY Voltage-gated potassium channels 90 341 - -
Trre10g04018 840 SMART ANK_2a 625 654 IPR002110 GO:0005515
Trre10g04018 840 SMART ANK_2a 689 718 IPR002110 GO:0005515
Trre10g04018 840 SMART ANK_2a 592 621 IPR002110 GO:0005515
Trre10g04018 840 SMART ANK_2a 656 685 IPR002110 GO:0005515
Trre10g04018 840 SMART ANK_2a 722 752 IPR002110 GO:0005515
Trre10g04018 840 ProSiteProfiles Ankyrin repeat profile. 592 624 IPR002110 GO:0005515
Trre10g04018 840 CDD CAP_ED 416 522 IPR000595 -
Trre10g04018 840 ProSiteProfiles Ankyrin repeat profile. 656 688 IPR002110 GO:0005515
Trre10g04018 840 MobiDBLite consensus disorder prediction 1 42 - -
Trre10g04018 840 Gene3D - 556 654 IPR036770 -
Trre10g04018 840 ProSiteProfiles Ankyrin repeat region circular profile. 689 721 - -
Trre10g04018 840 Pfam Ion transport protein 96 341 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Trre10g04018 840 ProSiteProfiles Ankyrin repeat region circular profile. 592 624 - -
Trre10g04018 840 SUPERFAMILY cAMP-binding domain-like 344 533 IPR018490 -
Trre10g04018 840 ProSiteProfiles KHA domain profile. 767 840 IPR021789 -
Trre10g04018 840 ProSiteProfiles Ankyrin repeat profile. 689 721 IPR002110 GO:0005515
Trre10g04018 840 SMART cnmp_10 416 534 IPR000595 -
Trre10g04018 840 FunFam Potassium channel KAT2 404 541 - -
Trre10g04018 840 Pfam Ankyrin repeats (3 copies) 662 743 IPR002110 GO:0005515
Trre10g04018 840 Pfam Ankyrin repeats (3 copies) 567 655 IPR002110 GO:0005515
Trre10g04018 840 ProSiteProfiles Ankyrin repeat profile. 625 657 IPR002110 GO:0005515
Trre10g04018 840 SUPERFAMILY Ankyrin repeat 566 744 IPR036770 -
Trre10g04018 840 Gene3D - 655 752 IPR036770 -
Trre10g04018 840 MobiDBLite consensus disorder prediction 1 16 - -
Trre10g04018 840 ProSiteProfiles Ankyrin repeat region circular profile. 656 687 - -
Trre10g04018 840 PRINTS EAG/ELK/ERG potassium channel family signature 240 250 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04018 840 PRINTS EAG/ELK/ERG potassium channel family signature 131 141 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04018 840 PRINTS EAG/ELK/ERG potassium channel family signature 288 305 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04018 840 PRINTS EAG/ELK/ERG potassium channel family signature 332 341 IPR003938 GO:0005249|GO:0006813|GO:0016020
Trre10g04018 840 FunFam Potassium channel SKOR 96 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04018 Trre-Chr10 49433942 49448638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04018 663 742 Ion Channels AT5G37500 34.314 1.23e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04018 K21867 - gmx:100814385 1400.19