Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04017 ATGAGCTCTTCTTCCTCTAGAAAAATTAATGAGGATGCGCAAGAGGCACAAGGTGAAGTTCACCTGCCAAGGTGGCTTGAGCAATTTTTAGGGCAAAAGTCCTCTGACTCTTGTGCTGCTCATTTGAATCGAAGGAATATATACTACTGCATAAAATGCGAAGTATCTGCTTGTCAGGATTGTATGTCATTAGGAGCTCATGAAGATCACCAAATACTGCAAATCCGTAAATATTTTTACATGGATGTTGTACACCTGAATGATATGCAGCCATATATCAACTGCTCCCAGATCCAGCCCTTCAAAGCTAACCAGAACCAGGTTCTGAATTGTCGTCCGCGTTGTGGATCAACATTGGATGATGCAACATCATGCAACAATAGCAGCATAAAATCGAAAATAGCTAAAGCATATCCGTACTGCTCCATAACTTGCATGGTGAAAGCTGCAAGGAAGTCTTCAATTCCTCCTATCGTTTACATCCAGGCTCCTCCTCCTCCTCCTCCTCCTCCTCAGGAATCACTTGGGGAAATTTCTCAGCCCTCTAAGCGAAAGAGGAAACGAAAAGGAACTCCACATAGAGCTCCGTTGTTCTAA 597 0.4322 MSSSSSRKINEDAQEAQGEVHLPRWLEQFLGQKSSDSCAAHLNRRNIYYCIKCEVSACQDCMSLGAHEDHQILQIRKYFYMDVVHLNDMQPYINCSQIQPFKANQNQVLNCRPRCGSTLDDATSCNNSSIKSKIAKAYPYCSITCMVKAARKSSIPPIVYIQAPPPPPPPPQESLGEISQPSKRKRKRKGTPHRAPLF 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04017 198 ProSiteProfiles Zinc finger B-box type profile. 33 75 IPR000315 GO:0008270
Trre10g04017 198 CDD Bbox2 38 75 - -
Trre10g04017 198 MobiDBLite consensus disorder prediction 182 198 - -
Trre10g04017 198 Gene3D Classic Zinc Finger 37 79 - -
Trre10g04017 198 SMART bboxneu5 33 75 IPR000315 GO:0008270
Trre10g04017 198 Pfam PLATZ transcription factor 76 147 IPR006734 -
Trre10g04017 198 SUPERFAMILY B-box zinc-binding domain 33 88 - -
Trre10g04017 198 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 16 197 - -
Trre10g04017 198 Pfam B-box zinc finger 36 75 IPR000315 GO:0008270
Trre10g04017 198 MobiDBLite consensus disorder prediction 159 175 - -
Trre10g04017 198 MobiDBLite consensus disorder prediction 158 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04017 Trre-Chr10 49410344 49412972 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Trre10g04017 PLATZ 5.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04017 - - tpra:123919466 242.276