Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04014 ATGGATGCTCAAGCCAAGAAAAAAGCATTGTTTCGTGCCAAATTGAATGCCCAGAAGAAGGAAAAACGCATAGAATCTCCCCTCGTTAGGTATAATGAATTTGATCAGCCTGTTTGCCGGGTTTGTGAAGTTGTTCTGAAGTCGGAGTCCCTATGGGATGCACACCAAGTTTCTCGTAAGCATCGTGAGGCAATAAGTAATCTTAAAGCTAATGCGGCTGGGTTAACTAAGCAAAACAATGCAAAGCCTGATGTTCCCAAGGCTAAACCTGAACAGTCTTCAAGCTCACAGTTCAAACGTCCCCGAAGTCCACAAGAAGTACCTAAACCTCAGTCATCATCAGTTCTTCCGCCAGATTTTTTTGACAACAATGATGCAAAAAAGGCAAGATCTGAAAAGGACTTGGACTCAGATTTGGGGGCTTCTGCTCAAAGCTCGGTGTCAAACTCGAAGGAGAAAGACCATTTCCATGGAAATAATACTACACAGTCAAAGGTTAATCAAGCAACAGTGGACGCTAAGCAGACATCAGTCAAGGCTATAGATGCAGAGATCAAACAAGGAAAAGGAGCTTTGCCTGAAGGCTTTTTTGATAATAAAGAGGCTGATTTGCGGGCACGTGGCATTAAGCTGGTTAAGCCAGATGTCAAAGATGAGTACAAGGAATTTGAGAAGTTGATTCAAGAGGACTTGCGGGAGGTGGATGATCGGATGGAAGAAGAAGAGATTGATGCTGCAGAAATGATAGAAGAAGCTGAATCTGCTGAGCAAAAAAACTTAAAGGAGAAAGTGGAAATGTTGAAGAGGAAGAGATTGGAGCTAAAAGCTTCTAAATCTGCAAAGCTTAGTAAATCTTCTTCTGATGTTGTGACCAAAGAGTCTAGACATGAAGATTCATCCAGTGATGATGAAAGTGGTGAGAATTTTGCTGTGGACTGGAGAGCTCAACACTTGTGA 957 0.4232 MDAQAKKKALFRAKLNAQKKEKRIESPLVRYNEFDQPVCRVCEVVLKSESLWDAHQVSRKHREAISNLKANAAGLTKQNNAKPDVPKAKPEQSSSSQFKRPRSPQEVPKPQSSSVLPPDFFDNNDAKKARSEKDLDSDLGASAQSSVSNSKEKDHFHGNNTTQSKVNQATVDAKQTSVKAIDAEIKQGKGALPEGFFDNKEADLRARGIKLVKPDVKDEYKEFEKLIQEDLREVDDRMEEEEIDAAEMIEEAESAEQKNLKEKVEMLKRKRLELKASKSAKLSKSSSDVVTKESRHEDSSSDDESGENFAVDWRAQHL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04014 318 Gene3D Classic Zinc Finger 32 70 - -
Trre10g04014 318 Pfam Zinc-finger of C2H2 type 39 61 - -
Trre10g04014 318 MobiDBLite consensus disorder prediction 276 318 - -
Trre10g04014 318 MobiDBLite consensus disorder prediction 89 119 - -
Trre10g04014 318 MobiDBLite consensus disorder prediction 70 171 - -
Trre10g04014 318 Coils Coil 231 277 - -
Trre10g04014 318 MobiDBLite consensus disorder prediction 123 137 - -
Trre10g04014 318 PANTHER UNCHARACTERIZED 1 318 IPR040050 GO:0003676|GO:0005681|GO:0008270
Trre10g04014 318 SUPERFAMILY beta-beta-alpha zinc fingers 31 72 IPR036236 -
Trre10g04014 318 MobiDBLite consensus disorder prediction 288 310 - -
Trre10g04014 318 Coils Coil 58 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04014 Trre-Chr10 49393472 49398698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04014 1 318 C2H2 Transcription Factor Family AT3G02860 54.268 2.00e-95 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04014 K13104 - gmx:100808515 437.187