Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04008 ATGGGTCGTGGGACTGGAAAAGTAACCTTGAAAAAGATTCAAAATGAAAAAGTTCGTAAATCAGCTTTTATTCAGAGAAATAAAGGATTAACAAAAAAAGTGTCTGAGTTTTCTAAAAACTTTGGAGTTGAAGCTTGCTTAATTGTGTACGAAGGTGATGGTGATGGTAAGCCAATGACTTGGCCACAAGACTCCACAACTATACAATCCATTCTTACAAAATATGAGCAACAAAAGAATGAGACAACTCCAAAGATATTTGATGTGAAGGATTATTTTGCAAATAAGAAGAATATGGTTGAGGCTGAGATTAAGCAAGTGCGCAAAAAAATCGTGATGAACAAATATCCAACTTGGGGTCGATGTTTCAATAACATGGAAAGGGAGCAACTTAAAGGTTTCATTGATATTGTAGATCTCAAGATTCAAGCTTGTAATCAAAGAATCGACATGCTGAAAAATATGCAACAAAGTGATCAAACTAGTTTCATGCAAAACACTGTTCAAATGCAAAGTGCGGCGCCGAAGAATGTTGCTTCTCTACAATCAAGTCAACCTGACGATCCTATGAAGCCGCTTATTAATATTGATGAGATGATAGATTTTACTGATCTTGTGGATATGCCTCCAATTTCATCAACAAAACAACTTGGTGAGTTTGTGAAGTTGGATGATCTAATGGATAAATCTGATCAAGAATGGGCTAATCAACTTGTGGATTTGGATGGCTGGGATGCTAATAAACTAGATGATGATAGTGATGGTATTGTGAATTTGGTTAGGGAACCTGATGTTTTTGAATGGCAAAATTATTCCTTTTCAACTGAAATTGAACAACAGTGTGCAGCATTGGATGTCTTTTCCCAACCAAGATATGGATTTTAA 885 0.3571 MGRGTGKVTLKKIQNEKVRKSAFIQRNKGLTKKVSEFSKNFGVEACLIVYEGDGDGKPMTWPQDSTTIQSILTKYEQQKNETTPKIFDVKDYFANKKNMVEAEIKQVRKKIVMNKYPTWGRCFNNMEREQLKGFIDIVDLKIQACNQRIDMLKNMQQSDQTSFMQNTVQMQSAAPKNVASLQSSQPDDPMKPLINIDEMIDFTDLVDMPPISSTKQLGEFVKLDDLMDKSDQEWANQLVDLDGWDANKLDDDSDGIVNLVREPDVFEWQNYSFSTEIEQQCAALDVFSQPRYGF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04008 294 SUPERFAMILY SRF-like 4 82 IPR036879 GO:0003677|GO:0046983
Trre10g04008 294 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
Trre10g04008 294 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Trre10g04008 294 Gene3D - 15 99 IPR036879 GO:0003677|GO:0046983
Trre10g04008 294 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04008 Trre-Chr10 49333715 49334722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04008 1 148 Type I MADS-box Gene Family AT5G55690 32.680 3.45e-17 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g04008 SRF-TF 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04008 - - tpra:123922586 427.557