Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04002 ATGAAACTGAAAAAAACTCCTCTGGTTTTTCTCATATCGTGTTTAATTCTCATTGTTTCCAGTGCCACCGCCGATCTAGCTTCTGATCGAGAAGTTCTAATAAAACTACGAGCCTCCGTCGGTGGACGGACACTCTTTTGGAACACGACGGAGACAGACCCGTGTTTATGGACCGGCGTTATCTGCAATAACAAAAGAGTTACAGCTTTAAGATTACCGGCGATGGGTCTCACCGGTAATCTTCCTTTAGGTTTAGGTAATCTTACTGAATTGCAGACACTTTCTCTCCGGTTTAATGCGTTAACCGGAGAAATTCCTTCTGATTTTGGGAATCTAGTTTCTCTGAGAAATCTTTATCTTCATAGTAATTTTTTCTCCGGTGAGGTTCCTGAATTTTTGTTTAGTTTGAAGAATTTGGTTCGGTTGAATTTAGGTAAAAACAATTTCAGTGGTGAAGTTTCTGAGAAATTTAACAAGTTAACTCGTTTGGATACACTCTTTTTGGAGCAAAACCGGTTCACTGGTTCTGTTCCTGATCTTAATGTTCCTCCATTACATCAATTCAATGTTTCGTTTAACAATTTGACCGGTTCGATTCCGAAGAGGTTTTCGCGTTTAGATATAAGCGCTTTTTCTGGAAATTTACTTTGTGGGAAACCTCTTCAAGTAACTTGTCCTGGAGAAAGTAACAAAAATGGCTTATCTGGTGGAGCTATTGCTGGTATTGTGATTGGTTGTGTTTTTGGTTTTTTGTTGATTTTGATACTTTTGGTGTTGTGTTGTAGAAAAAGAAGAAAAAGTGATTCTGATAATGTAGCACGTGCTAAGAGTGTTGAAGGTGATGTGTCACGTGGGAAAACAAATAGAGATGTTGAGAGTGCTGGTGGTGGTGCTGATGGAGGAAGTTATTCGGGTTTGGCTTCGGCTTCGACAACGGCCTCGGCTTCTGGTGTGTCATTAGAGAAGAGTTTGGTGTTTATTGGGAATGTGACTAAAAAATTTAGTTTAGATGATTTGTTAAGAGCTTCTGCTGAAGTTTTGGGAAAAGGGACATTTGGAACAACTTATAAGGCAACATTGGAGATGGGAATGAGTGTGGCTGTGAAAAGATTGAAGGATGTTACAGCAAGTGAAAGAGAATTCAGAGAGAAAATTGAAGAAGTTGGGAAATTGGAGCATGAGAATTTGGTCCCACCTAGAGGTTATTATTTTAGTAAAGATGAAAAACTTGTTGTGTATGATTATATGCCAATGGGAAGCTTATCTGCACTCTTGCATGCAAATAATGGTGCTGGAAGGACTCCACTGAATTGGGAAACTAGGTCAACCATTGCCCTTGGTGCTGCCCAAGGGATTGCATACCTACACTCACAAGGTCAGACATCTTCCCATGGAAACATCAAGTCATCAAACATCCTTCTCACCAAATCTTACGAGCCTCGTGTCTCTGACTTTGGCCTCGCGTATCTCGCACTTCCGACCGCTACCCCCAACCGAATTTCTGGCTACCGTGCACCAGAGGTCACCGACGCGCGCAAAGTATCCCAAAAAGCAGATGTCTACAGCTTCGGTATAATGCTTTTGGAGCTACTTACAGGGAAGGCGCCTACTCATTCTTCGTTGAATGAAGAAGGAGTAGACCTACCTAGATGGGTTCAATCCATCGTTCAAGACGACTGGAACAATGAGGTTTTCGACATGGAGCTTCTCAGGTACCAAAGTGTTGAGGAGGAAATGGTGAATCTATTGCAGCTTGCTCTTGAATGTACTGCTCAATATCCTGATAAGAGACCTTCAATGGATGTGGTTGCTAGCAAGATCGAGAAAATTTGTCGTCCTAGTTTAGAGAAAGTGGGAGATAAGATTCTTGATGAATGA 1878 0.4148 MKLKKTPLVFLISCLILIVSSATADLASDREVLIKLRASVGGRTLFWNTTETDPCLWTGVICNNKRVTALRLPAMGLTGNLPLGLGNLTELQTLSLRFNALTGEIPSDFGNLVSLRNLYLHSNFFSGEVPEFLFSLKNLVRLNLGKNNFSGEVSEKFNKLTRLDTLFLEQNRFTGSVPDLNVPPLHQFNVSFNNLTGSIPKRFSRLDISAFSGNLLCGKPLQVTCPGESNKNGLSGGAIAGIVIGCVFGFLLILILLVLCCRKRRKSDSDNVARAKSVEGDVSRGKTNRDVESAGGGADGGSYSGLASASTTASASGVSLEKSLVFIGNVTKKFSLDDLLRASAEVLGKGTFGTTYKATLEMGMSVAVKRLKDVTASEREFREKIEEVGKLEHENLVPPRGYYFSKDEKLVVYDYMPMGSLSALLHANNGAGRTPLNWETRSTIALGAAQGIAYLHSQGQTSSHGNIKSSNILLTKSYEPRVSDFGLAYLALPTATPNRISGYRAPEVTDARKVSQKADVYSFGIMLLELLTGKAPTHSSLNEEGVDLPRWVQSIVQDDWNNEVFDMELLRYQSVEEEMVNLLQLALECTAQYPDKRPSMDVVASKIEKICRPSLEKVGDKILDE 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04002 625 PANTHER OS05G0588300 PROTEIN 9 611 - -
Trre10g04002 625 Gene3D Ribonuclease Inhibitor 182 228 IPR032675 -
Trre10g04002 625 SUPERFAMILY L domain-like 47 206 - -
Trre10g04002 625 MobiDBLite consensus disorder prediction 272 302 - -
Trre10g04002 625 Gene3D Phosphorylase Kinase; domain 1 307 415 - -
Trre10g04002 625 CDD STKc_IRAK 347 610 - -
Trre10g04002 625 Gene3D Ribonuclease Inhibitor 26 181 IPR032675 -
Trre10g04002 625 ProSitePatterns Protein kinases ATP-binding region signature. 347 369 IPR017441 GO:0005524
Trre10g04002 625 FunFam Probable inactive receptor kinase At1g48480 416 618 - -
Trre10g04002 625 Pfam Protein kinase domain 344 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g04002 625 SUPERFAMILY Protein kinase-like (PK-like) 344 605 IPR011009 -
Trre10g04002 625 Pfam Leucine rich repeat N-terminal domain 27 63 IPR013210 -
Trre10g04002 625 FunFam Probable inactive receptor kinase RLK902 26 181 - -
Trre10g04002 625 Gene3D Transferase(Phosphotransferase) domain 1 416 621 - -
Trre10g04002 625 MobiDBLite consensus disorder prediction 272 288 - -
Trre10g04002 625 FunFam pollen receptor-like kinase 1 309 415 - -
Trre10g04002 625 ProSiteProfiles Protein kinase domain profile. 341 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04002 Trre-Chr10 49274067 49276880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04002 23 613 Receptor kinase-like Gene Family AT1G48480 56.230 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre10g04002 Pkinase 5.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04002 - - gmx:100801582 840.876