Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g04000 ATGGGAAGACAACCTTGTTGTGACAAAGTGGGATTGAAAAAAGGACCATGGACTGCAGAGGAAGACAAGAGGCTCATCAATTTCATCCTTACTAATGGTCAATGTTGCTGGAGAGCTGTCCCTAAATTGGCAGGTCTATTAAGGTGTGGAAAAAGTTGTAGACTTAGATGGACAAATTATTTGAGGCCAGATTTAAAGAGAGGACTTTTATCAGAATATGAAGAAAAAATGGTGATTGATCTTCATGCTCAACTTGGGAACAGATGGTCTAAAATTGCTTCTCATCTACCCGGAAGAACGGACAATGAAATAAAAAATCATTGGAATACTCACATAAAGAAAAAGCTCAAGAAAATGGGAATTGATCCTCTCACTCACAAACCACTAGTACTCACTAATGCAACTAATCAAACCCAAAATCAACCGATAGAAGAACAAGAGCTACACCAACCAATAGAAAAAGAACAACAAAACCAACAACCTTTGACAATTGACATTAATGATACCAAAATTGAATCTAAAATTGAGGACATGGAAAAACAAGAGACTTCAATTGAGTCATCAACCATCATTGAAGTCAAAGAAAAAGATGATATTACAATAACACCCTTATTTGACACAATGGAGCTAATGGATGGATTTTGTATTGATGAAGTTCCAATGATAGAACCTAATGAGATTATAATGTCTAATTCTTCTTCATCCACTTCTTCATCATCTTCATCAAATAATTCAACCACTTTCCTTGAAGATCTCTTTGATTTTGAATGGTCTAATAATAATAACAAGGAAGAGAACAATACCAATAATATGGCATTTTGGGATGATGACTTTATTAGTAGCTTGAATTTGCTAATTAATGATGATGATTATGATGTTAATAATGGTGAAAGAAAGCAAGAATTTGATGCTCATGCTCCTCTTAGCAACTACTCAAGAATGGTCACGGATTCAGAATCTTGGGCGTATGATTTATTTTGA 981 0.3456 MGRQPCCDKVGLKKGPWTAEEDKRLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPLTHKPLVLTNATNQTQNQPIEEQELHQPIEKEQQNQQPLTIDINDTKIESKIEDMEKQETSIESSTIIEVKEKDDITITPLFDTMELMDGFCIDEVPMIEPNEIIMSNSSSSTSSSSSSNNSTTFLEDLFDFEWSNNNNKEENNTNNMAFWDDDFISSLNLLINDDDYDVNNGERKQEFDAHAPLSNYSRMVTDSESWAYDLF 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g04000 326 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 258 - -
Trre10g04000 326 SMART sant 66 114 IPR001005 -
Trre10g04000 326 SMART sant 13 63 IPR001005 -
Trre10g04000 326 Gene3D - 11 67 - -
Trre10g04000 326 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre10g04000 326 CDD SANT 16 61 IPR001005 -
Trre10g04000 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre10g04000 326 Pfam Myb-like DNA-binding domain 71 111 IPR001005 -
Trre10g04000 326 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre10g04000 326 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre10g04000 326 FunFam MYB transcription factor 11 67 - -
Trre10g04000 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre10g04000 326 Gene3D - 71 116 - -
Trre10g04000 326 CDD SANT 74 112 IPR001005 -
Trre10g04000 326 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Trre10g04000 326 FunFam MYB-related transcription factor 70 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g04000 Trre-Chr10 49246164 49249108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g04000 1 289 MYB Transcription Factor Family AT1G66230 57.333 1.19e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g04000 Myb_DNA-binding 7.8e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g04000 K09422 - gmx:100803624 440.269