Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03986 ATGGCACCTGTTTCATTGCCTCCAGGTTTCAGGTTTCACCCTACCGATGAAGAACTTGTTGCTTATTATCTAAATAAGAAGATTAATGGCCATAAGATTGATTTAGAGATCATACCTGAAGTTGATCTCTATAAGTGTGAACCGTGGGACTTGCCAGGAAAATCATTATTGCCGGGAAAAGATATGGAGTGGTATTTTTTTAGCCCTCGCGATAGAAAGTATCCAAATGGATCAAGGACGAACCGGGCAACTAAATCTGGATATTGGAAGGCAACAGGAAAGGATCGAAAAGTGAATTCTCAAGCTCGAGCAGTGGGGATGAAGAAAACCCTAGTATACTATCGAGGAAGAGCTCCCCATGGATCTCGTACAAATTGGGTTATGCATGAATATCGTCTAGATGAGAGGGAATGTGAAACCACTCCAAGCTTGCAGGATGCGTATGCTCTTTGTCGTGTGATCAAGAAGAGTACAGTGATTGTGCCAAAAGTTGGAGGACAATATAGTAATCTTACAAGCCATGCCAACCAAATTACAAGCAACCAATCACCAAGCGTTGAGCAATACTCTGAAGGAAGGGGTGAAGATTTAGAAAGTTCAAATTATTTGATGCAAATGAATGCTTGTTCATCTCACAATATGGGAAGTGAGACTTCTCTCAATATCAATGGTGGGATAAGGGATCATGGAAATTGGTCACAATCCTCATATGATCAAGGGCCATTTTTGAGTCCTCCAACTTCTTCATTTTCTAATTATGGAGCCATAACATACCCTCCGTCCAAGATGGATATTGCACTAGAGTGTGCAAGGATGCAACATAAGTTCTCTATGCCTCCATTGGAGGTGGAGGACATTCCTCAAGGAAGCAGAACTAAAAATGATGTCTTGCAAGAAATTCTTTCACTTAATCATGCTTCTCAGGAATTGACGAATCACTCAAGTTACTCACAAGCATTGGGTGACAATGATACTTATGCTCCTTATGAAGATGATTTTACTTTCATGGTTGGCAGTAACTACAATCACATAAATGATATGAGCTCAATGAGATATGTTGACAACACTTGGGAAGATTTGAACACAAGATCCATAGAGATAGGTGGTCTAGAGGATCAAGAGTTAAAGGCAAAGAGGATAGTAGAGAATTTGAGATGGATTGGAATGCCAAGAGAAGATTTTGAAAAGATGGAACAAAAGATTGTCCCAATCGAGGATATTTCATGCTTCCAAACTTTAAGGGAACCAAATGGCTTGCAAGAATATGAGCAAAACTATGGCAACCTCGAGCAAAATGACACTTTTGTCAATGAATTCTCATTAGGCTTCATTAATGATGGTGACCCTAATGAAAATTTTATAGAAGATGGTAACATGGATGATTACTCAAATTCTCCAAGCTTTGAGGTCATTGAAGAAATAAAGGTCAGTCATGCAATGTTGGTTTCAACTCAACAAGTAGCCATGACATTGTTTCACCAAGTTGTTCCTTCACAAACACTCCAAGTTCAATTCAATCCAATGATGGCAAATAAAAACAACTCCATAGAGAATGTAGAGGCAGTGATGATGATAATGGAGAATCAAGGGTCTTTCTTTAGGAAGTTTAAGTCTCGTATGATGGGGAAGTGGAACCTATTCAATCCATCAAGGAAAATAGCAAGTTTGGTTGTATTTGTATTTTCACTTCTTTTGATGTATTGTGTTTATTTGGAGGAAGAAGTGGAAATAGTATGCAAACCAAACTCAAATAATATGAAAGATAAAAGAATGAGAGAATCATATGAGAGAATCAAATGGAATGAGTCAAATGAGGTTTTGTTTATTGGTGTTAAAAGTGAGAAAGGATTAAGTGTGGTCTTGAAGAAAATATGCATTTTCCTCACCATATGTTTGGCTCTTTGTACCATGTGGGCTAGCCATAGTTAA 1929 0.3826 MAPVSLPPGFRFHPTDEELVAYYLNKKINGHKIDLEIIPEVDLYKCEPWDLPGKSLLPGKDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQARAVGMKKTLVYYRGRAPHGSRTNWVMHEYRLDERECETTPSLQDAYALCRVIKKSTVIVPKVGGQYSNLTSHANQITSNQSPSVEQYSEGRGEDLESSNYLMQMNACSSHNMGSETSLNINGGIRDHGNWSQSSYDQGPFLSPPTSSFSNYGAITYPPSKMDIALECARMQHKFSMPPLEVEDIPQGSRTKNDVLQEILSLNHASQELTNHSSYSQALGDNDTYAPYEDDFTFMVGSNYNHINDMSSMRYVDNTWEDLNTRSIEIGGLEDQELKAKRIVENLRWIGMPREDFEKMEQKIVPIEDISCFQTLREPNGLQEYEQNYGNLEQNDTFVNEFSLGFINDGDPNENFIEDGNMDDYSNSPSFEVIEEIKVSHAMLVSTQQVAMTLFHQVVPSQTLQVQFNPMMANKNNSIENVEAVMMIMENQGSFFRKFKSRMMGKWNLFNPSRKIASLVVFVFSLLLMYCVYLEEEVEIVCKPNSNNMKDKRMRESYERIKWNESNEVLFIGVKSEKGLSVVLKKICIFLTICLALCTMWASHS 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03986 642 Coils Coil 509 529 - -
Trre10g03986 642 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Trre10g03986 642 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 238 - -
Trre10g03986 642 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Trre10g03986 642 FunFam Nac domain-containing protein 86 15 159 - -
Trre10g03986 642 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Trre10g03986 642 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03986 Trre-Chr10 49114021 49119349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03986 1 637 NAC Transcription Factor Family AT1G65910 40.757 7.54e-148 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g03986 NAM 9.3e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03986 - - tpra:123920692 1070.46