Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03984 ATGGAAGACCAAAAACATGCCAGGGAGACTGTTGATTCCACAAGAGATAGCTCTGTTCCTCTGATGGTTTCCAACTCTAAATTGCTCGATTGTTACATTTGTTTCCAACCCTTAAGTATTCCTGTTTTCCAGTGTGATAATGGTCATATTGTGTGCTCTACCTGCTGCTATAAAGGTCAAGACAAGTGTCACAAATGCTCAAAGCACAATACCTTAAAACGTTGCAAAGCCATTGAGAATCTATTGCAATATATCGAAATACCATGCCCAAATGAAAAACATGGTTGCAAGGAGACAATAAGTTACATTGGAAAGAGTAAGCATGAAGAAGAATGTATCTATGTGCCATGTTACTGTCCTGTTTCAGGTTGTGACTTTGTTGCCTCATCTGAAGTGTTGTCCGACCATTTCAGCCATAAACATTCTAAACCCAAATTTTCTTATGATCACCCCTTTTGTGTCTCATTGAAGTATAATGATGAAGCCATTGTTTTTCAAGCGGCAATTGACGGCAAACTATTTATACTCAATCATAATACTATGCTTATGGGAAAGGCAGTACTAGTCAATATTAGTTGCATTGGTCCTAACTCTTCTGACGATGAATATAGTTATGATATATTGGCTAGGTCTAAGAAATGTAGTCTGAAGTTACATTCTTGCCCGAAGAACGTCCAACGGATTGCTTTAGAAACTATTTCTTCTGAGTTCCTCATAATTCCATTTAGTTATCTTGGTTCTTTTGAACCTCTCACGCTAGAGATTTGCATATACCGCACGATGCATATCTTCATAAAGACAATGACTGGGAAAATTTTATCCCTAAGGGTAAAGAGTTCAGACACGATACTCGATGTGAAGCTCAAGATTGTTGACAAGGAAAGAATCCCGGTGCATCTGCAACGTCTGATCCTTGAGATTAAACAACTCGATGGCAGCCCAACCCATATGGGTAAGCAACTAGACGACAGCTCAACCCTTGCACATTACAAAATCGAAGAGGACTCGGGCCTCCACCTCGTCCTCCGCTTATGTGGAAGTTAG 1044 0.3985 MEDQKHARETVDSTRDSSVPLMVSNSKLLDCYICFQPLSIPVFQCDNGHIVCSTCCYKGQDKCHKCSKHNTLKRCKAIENLLQYIEIPCPNEKHGCKETISYIGKSKHEEECIYVPCYCPVSGCDFVASSEVLSDHFSHKHSKPKFSYDHPFCVSLKYNDEAIVFQAAIDGKLFILNHNTMLMGKAVLVNISCIGPNSSDDEYSYDILARSKKCSLKLHSCPKNVQRIALETISSEFLIIPFSYLGSFEPLTLEICIYRTMHIFIKTMTGKILSLRVKSSDTILDVKLKIVDKERIPVHLQRLILEIKQLDGSPTHMGKQLDDSSTLAHYKIEEDSGLHLVLRLCGS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03984 347 Pfam Seven in absentia protein family 74 248 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03984 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 137 IPR013083 -
Trre10g03984 347 ProSiteProfiles Ubiquitin domain profile. 261 347 IPR000626 GO:0005515
Trre10g03984 347 SMART ubq_7 261 343 IPR000626 GO:0005515
Trre10g03984 347 ProSiteProfiles Zinc finger SIAH-type profile. 84 142 IPR013010 GO:0008270
Trre10g03984 347 SUPERFAMILY TRAF domain-like 85 257 - -
Trre10g03984 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 12 259 IPR044286 -
Trre10g03984 347 CDD RING-HC_SIAHs 29 67 - -
Trre10g03984 347 Gene3D - 257 347 - -
Trre10g03984 347 Pfam Ubiquitin family 263 344 IPR000626 GO:0005515
Trre10g03984 347 PRINTS Ubiquitin signature 271 291 IPR019956 -
Trre10g03984 347 PRINTS Ubiquitin signature 292 312 IPR019956 -
Trre10g03984 347 SUPERFAMILY Ubiquitin-like 242 346 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03984 Trre-Chr10 49080059 49084265 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03984 261 347 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 54.023 2.18e-20 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03984 K04506 - mtr:11432566 404.445