Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03982 ATGGAAGACCAAAATCCAACACATCAAACCGCTGGAGGAGTCTACAACTTCTCTTCCAAAGCTGCAATGGAGACTATTGATTCCGCAAGAGATGACTCTGTTTCCCTGATGATTTCAAACCCTAAAATGTTAGATTGTTGCGTTTGTTTTCAACCCTTAAGTATTCCGGTCTTTCAGTGTGATAATGGTCATATTATTTGCTCTACCTGCTGTCCTGAACTCAGGAACGAGTGTCCCAAGTGTACGTTGCGCATTAGCTCAAAACATTGTAAAGCCATTGAGAATCTATCACTATCTATCGAAATGTCATCTCCGGATACAAAATATGGTTGCCGGGAGAAAATAATTTACCTTGGAAAAAGGAAGCATGAAGAAGAGTGCATTCATGAACCATGTTACTGCCCCTTTTTAGGTTGTGACTTTGTTGCATCATCAAAAGTGTTGTCCAGCCATTTCAGCAATAAACACGGGGATTCTCAAATCCGATTTTCTTATGGTGACTTCTTTGTTGTCTCCATGATGTCTAATGATGAAACTATTGTTCTTCAAGAGCAAAATGATGACAAATTGTTTATTCTCAATAAAAGTACTATGACTTTCGGAAATGCTGTCAATATTTGCTGCATTGGTCCTAACCTTCCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGACTCCGAAATGCAAACTAAGATTACAATCTTTTGCGACGAATGTCAAACAATTTACTTTAACAACATTTTCATCAAACTTCCTTATGATTCCATCTGATTCTTCTAAACCTCTCAAGCTACAAATTTGCATAAACCCCTGCATGATGCAAATTTACATAAGGGACTTGACTGGAACGAGGACCCCCCTGAGGGTTAATAGTTCAGACACTATAGTCAATGTGAAGTTAAAGATTTTTGACAAGAAAAGGGTTCCAGTGCACCAGCAAAGTCTGATCTTTAACCATATGCAACTAGATGATAGAATGACCATTGCCGATTGCAACATCAAAGAGAAGTCAACCATCCACCTACAGCTCCGCCTCACTGGGAATTAG 1050 0.3905 MEDQNPTHQTAGGVYNFSSKAAMETIDSARDDSVSLMISNPKMLDCCVCFQPLSIPVFQCDNGHIICSTCCPELRNECPKCTLRISSKHCKAIENLSLSIEMSSPDTKYGCREKIIYLGKRKHEEECIHEPCYCPFLGCDFVASSKVLSSHFSNKHGDSQIRFSYGDFFVVSMMSNDETIVLQEQNDDKLFILNKSTMTFGNAVNICCIGPNLPESEYSYDILARTPKCKLRLQSFATNVKQFTLTTFSSNFLMIPSDSSKPLKLQICINPCMMQIYIRDLTGTRTPLRVNSSDTIVNVKLKIFDKKRVPVHQQSLIFNHMQLDDRMTIADCNIKEKSTIHLQLRLTGN 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03982 349 SMART ubq_7 274 345 IPR000626 GO:0005515
Trre10g03982 349 SUPERFAMILY Ubiquitin-like 268 349 IPR029071 -
Trre10g03982 349 SUPERFAMILY TRAF domain-like 107 270 - -
Trre10g03982 349 Gene3D - 270 349 - -
Trre10g03982 349 ProSiteProfiles Ubiquitin domain profile. 274 349 IPR000626 GO:0005515
Trre10g03982 349 Pfam Ubiquitin family 276 346 IPR000626 GO:0005515
Trre10g03982 349 CDD RING-HC_SIAHs 44 81 - -
Trre10g03982 349 Pfam Seven in absentia protein family 92 250 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03982 349 PRINTS Ubiquitin signature 284 304 IPR019956 -
Trre10g03982 349 PRINTS Ubiquitin signature 326 347 IPR019956 -
Trre10g03982 349 PRINTS Ubiquitin signature 305 325 IPR019956 -
Trre10g03982 349 ProSiteProfiles Zinc finger SIAH-type profile. 99 157 IPR013010 GO:0008270
Trre10g03982 349 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 20 270 IPR044286 -
Trre10g03982 349 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 152 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03982 Trre-Chr10 49070756 49077414 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03982 274 349 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 55.263 1.97e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03982 K04506 - mtr:11432566 382.874