Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03981 ATGGAAGACCAAAAACCATGTCACTGTCCTCTTTTAGGTTGTGACTTTGTTGCATCATCAGAAGTGTTGTCCAACCATTTCAGCCATAAACACGGGAATTCTCAAATCCGATTTTCTTATGGTCACAACTTCGTTGTTTACTTGAAGTCTAAGTCTGATGACGAAACCATTAAATGCAAACTGAAATTACAGTCTTTTGCGAAGAATATTACGCAGTTTACTTTAGCAACTTTTTCATCAGGGTTCCTTGTGATTCCATTTAGTCCTTCAAGACTTTTCAAGCTAGAAATTTGCATAAAGCCAGTCCCCATGATGCAAATAATCATAAAGATGTTGGATCGTAGGGAGTTACCTCTGAGTGTTAAGATTTCAGATACGATCGGCGATGTGAAGCAGCAGATCTTTGACAAGGAAGGGATCTCATATAGCGATCAACGTCTGATCTTTTCCGGTAAGCAACCAGAAGACAATCAGACCCTTTTCGATTGCAACATCGAAGAGAATTCAACCATCTTCCTTGTCCTCCGCTTGATTGGGAGCTAG 543 0.4015 MEDQKPCHCPLLGCDFVASSEVLSNHFSHKHGNSQIRFSYGHNFVVYLKSKSDDETIKCKLKLQSFAKNITQFTLATFSSGFLVIPFSPSRLFKLEICIKPVPMMQIIIKMLDRRELPLSVKISDTIGDVKQQIFDKEGISYSDQRLIFSGKQPEDNQTLFDCNIEENSTIFLVLRLIGS 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03981 180 PANTHER UBIQUITIN 105 178 - -
Trre10g03981 180 Gene3D - 102 180 - -
Trre10g03981 180 SUPERFAMILY TRAF domain-like 5 88 - -
Trre10g03981 180 SUPERFAMILY Ubiquitin-like 97 179 IPR029071 -
Trre10g03981 180 ProSiteProfiles Ubiquitin domain profile. 105 180 IPR000626 GO:0005515
Trre10g03981 180 SMART ubq_7 105 176 IPR000626 GO:0005515
Trre10g03981 180 Pfam Ubiquitin family 107 177 IPR000626 GO:0005515
Trre10g03981 180 PRINTS Ubiquitin signature 136 156 IPR019956 -
Trre10g03981 180 PRINTS Ubiquitin signature 157 178 IPR019956 -
Trre10g03981 180 PRINTS Ubiquitin signature 115 135 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03981 Trre-Chr10 49066931 49067846 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03981 105 180 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 55.263 1.20e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03981 - K08770 mtr:11432566 153.295