Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03979 ATGGAAGACCAAAAACCAACACATCAAGCAAATGAAGTCTACAATTTCTCTTCAAAAAAACGTGCAATGGAGCCTGTTGATTCCGAAAAAGATAAATCTGTTCCTCCTCCGATGATTTCCAACTCTACATTGCTCGATTGTTACATTTGTTCTCAACCCTTACGTGTCCCCGTCTCTCAGTGTGATAATGGTCATATAACATGCTATTTTTGCTCTCCTAAAATGAAGAACGGGTGTCAAAAGTGCAAATTGCCCGTTAGCTCAAAACGTTGTAAAGTCGTTGAGAATTTATTGTTATCTATTGAGATGCCATGTCGGAATGCAAAACATGGTTGCAAGGAGAAAATAAGTTACGTTGGAAATCGAATGCATGAAGAAGAATGCATCCATGAACCATGTTACTGCCCCTTCTCAGGTTGTGACTTTGTTGCTTCATCAAAAGTGTTGTCCAACCATTTCAGCAATAAACACGGGGATTCTCAAATCCGATTTTCTTATGGTCACAACTTCGTTGTTTCATTGAAGTCTAATTCTAATGATGAAACCATTGTTCTTCATGAGGAAAATGATGGAAAACTATTTATTCTCGGTAATAATACTATGATTTTGGGAAATGCGGTCAATATTTGCTGCATTGGTCCTAACTCTTTTGGGTATAGTTATGATATGATGGCTAGATCTCAGAAATGCCAACTGAAATTACAGTCTTTTGCGAAGAATGTTTCGCAGTTTACTTTAGCAACTCTTTCATCAGGGTTCCTTATGATTCCATTTAGTTCTTCAGAACTTCTAAAGCTAGAAATTTGCATAAAGCCAGTCCCCATGATGCAAATATTCATAAAGAAGTTGGATCAGAGCTGGTTCCCTCTGAGGTTTAAGAGTTTAGACACGATAGGCGATGTGAAGCAGAAGATATTTGACAAGGAAGGGATCCCATATAACGATCAACGTCTGTTCTTTTCCGGTAAGCAACTAGAAGACAATCAGACCTTTGCTGATTACAACATCAGAGAGGAGTCAACAATCCACCTTGTCCTCCGCTGCATTGGGGACTAG 1056 0.3883 MEDQKPTHQANEVYNFSSKKRAMEPVDSEKDKSVPPPMISNSTLLDCYICSQPLRVPVSQCDNGHITCYFCSPKMKNGCQKCKLPVSSKRCKVVENLLLSIEMPCRNAKHGCKEKISYVGNRMHEEECIHEPCYCPFSGCDFVASSKVLSNHFSNKHGDSQIRFSYGHNFVVSLKSNSNDETIVLHEENDGKLFILGNNTMILGNAVNICCIGPNSFGYSYDMMARSQKCQLKLQSFAKNVSQFTLATLSSGFLMIPFSSSELLKLEICIKPVPMMQIFIKKLDQSWFPLRFKSLDTIGDVKQKIFDKEGIPYNDQRLFFSGKQLEDNQTFADYNIREESTIHLVLRCIGD 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03979 351 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 12 273 IPR044286 -
Trre10g03979 351 SUPERFAMILY TRAF domain-like 101 270 - -
Trre10g03979 351 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 95 153 IPR013083 -
Trre10g03979 351 SMART ubq_7 276 347 IPR000626 GO:0005515
Trre10g03979 351 SUPERFAMILY Ubiquitin-like 267 350 IPR029071 -
Trre10g03979 351 Pfam Seven in absentia protein family 90 179 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03979 351 ProSiteProfiles Ubiquitin domain profile. 276 351 IPR000626 GO:0005515
Trre10g03979 351 ProSiteProfiles Zinc finger SIAH-type profile. 100 158 IPR013010 GO:0008270
Trre10g03979 351 PRINTS Ubiquitin signature 328 349 IPR019956 -
Trre10g03979 351 PRINTS Ubiquitin signature 286 306 IPR019956 -
Trre10g03979 351 PRINTS Ubiquitin signature 307 327 IPR019956 -
Trre10g03979 351 FunFam 2'-5'-oligoadenylate synthase-like protein 2 275 348 - -
Trre10g03979 351 Pfam Ubiquitin family 278 347 IPR000626 GO:0005515
Trre10g03979 351 Gene3D - 273 351 - -
Trre10g03979 351 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03979 Trre-Chr10 49054466 49056537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03979 276 350 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.333 7.16e-24 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03979 K04506 - mtr:11432566 357.836