Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03978 ATGATTTTCTTTTATCTTGCATTTCAGTGTGATAATGGCCACATTGTTTGTTCTACTTGTTTTCCTAAACTTCACAACAAGTGTCAGAAGTGCTCATTGCCCATTAGCTCAAAACGTTACAAAGCCTTTGAGAATCCATTGCAATCTATCCAAATGCCATGCCCGAATGAAAAATATGGCTGCAGGGAGATAATAAGTCACAATGAAAAGAGGAAACATGAAGAAGAATGCATCTACTTGCCATGTTACTGTCCCCTTTCAGGGTGTGATTTTGTTGCCTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAACACGGGGATTCTCTGATCGAATTTTCTTATGGTCACACTTTCATCGTCTCCTTGAAGTCTAATGATGAAACCATTGTCCTTCAAGAGGAAAATGATGGCAAACTATTTATTCTCAACAATAGTACTATACTTTCAGGAAATGCAATCAATATTAGCTGCATTGATACTAACTCTTCTGAGGCTGAGTATAGTTATGATATATTGGCTAGGTCTAAGATATGCAATCTGACGTTGCATTCTTCTCCGAAGAATGTCCAACGGGCTACTTTAGCAACTCTTTCACCACAATTTCTCGTGATTCCATTTGGTTATTTCAGTTCTTCTGAAACTCCCAAGCTAGAAATTTGCATAACCCCTAAGATGCAAATCTATGTAATGACTATGATGGGAAAGATGATCCCTCTGAGGGTTGAGAGTTCGGACACAATCGCCAATGTGAAGGCAAAGATTCTTGACAAGGAAGCAATCCCAGTGCACCTGCAACATCTGATGTTTTCCGATAAGCCACTAGATGGCAACCAGACTCTTGCCAATTACAACATCAAAGAGAATTCAACCCTCCACCTCACTCTCCGCCTTCCCTAG 900 0.3989 MIFFYLAFQCDNGHIVCSTCFPKLHNKCQKCSLPISSKRYKAFENPLQSIQMPCPNEKYGCREIISHNEKRKHEEECIYLPCYCPLSGCDFVASLEVLSNHFNHKHGDSLIEFSYGHTFIVSLKSNDETIVLQEENDGKLFILNNSTILSGNAINISCIDTNSSEAEYSYDILARSKICNLTLHSSPKNVQRATLATLSPQFLVIPFGYFSSSETPKLEICITPKMQIYVMTMMGKMIPLRVESSDTIANVKAKILDKEAIPVHLQHLMFSDKPLDGNQTLANYNIKENSTLHLTLRLP 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03978 299 Pfam Ubiquitin family 228 298 IPR000626 GO:0005515
Trre10g03978 299 SUPERFAMILY Ubiquitin-like 209 298 IPR029071 -
Trre10g03978 299 SUPERFAMILY TRAF domain-like 49 222 - -
Trre10g03978 299 PRINTS Ubiquitin signature 278 299 IPR019956 -
Trre10g03978 299 PRINTS Ubiquitin signature 236 256 IPR019956 -
Trre10g03978 299 PRINTS Ubiquitin signature 257 277 IPR019956 -
Trre10g03978 299 ProSiteProfiles Ubiquitin domain profile. 226 299 IPR000626 GO:0005515
Trre10g03978 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 102 IPR013083 -
Trre10g03978 299 SMART ubq_7 226 297 IPR000626 GO:0005515
Trre10g03978 299 Pfam Seven in absentia protein family 47 205 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03978 299 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 223 IPR044286 -
Trre10g03978 299 Gene3D - 222 299 - -
Trre10g03978 299 ProSiteProfiles Zinc finger SIAH-type profile. 49 107 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03978 Trre-Chr10 49046116 49047171 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03978 226 298 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 63.014 1.17e-23 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03978 K04506 - mtr:11432566 397.512