Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03976 ATGACTATGCAAATATCCGTAAAGAGTAGGGGGGGAAATATTACCCTGTCGGTTAACAGTTCAGACACGATAATCGATGTGAAGAAGAAAATTTTTGAGAAGGAAAGAATACCAGTACACCAGCAAATATTGATGTTCAACGATAAGCATCTAGATAACAACATGACTCTTGCCTATTACAACATCGAAGATATGTCAACCCTCAACCGGTACACGAACACCCTCCACCTCAGGGGCCGCATGATGGCGGACTAG 255 0.4275 MTMQISVKSRGGNITLSVNSSDTIIDVKKKIFEKERIPVHQQILMFNDKHLDNNMTLAYYNIEDMSTLNRYTNTLHLRGRMMAD 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03976 84 PANTHER UBIQUITIN 3 70 - -
Trre10g03976 84 Gene3D - 1 84 - -
Trre10g03976 84 Pfam Ubiquitin family 5 69 IPR000626 GO:0005515
Trre10g03976 84 ProSiteProfiles Ubiquitin domain profile. 3 68 IPR000626 GO:0005515
Trre10g03976 84 PRINTS Ubiquitin signature 54 75 IPR019956 -
Trre10g03976 84 PRINTS Ubiquitin signature 12 32 IPR019956 -
Trre10g03976 84 PRINTS Ubiquitin signature 33 53 IPR019956 -
Trre10g03976 84 SMART ubq_7 3 80 IPR000626 GO:0005515
Trre10g03976 84 SUPERFAMILY Ubiquitin-like 2 68 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03976 Trre-Chr10 49014455 49015514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03976 3 79 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 53.846 1.18e-15 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03976 - K12825 tros:130548820 66.6254