Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03972 ATGTCTTCTTCCGGCATCTTCTTCACGACTATGCAAATATTCGTAAGGAGTAGGAGGGGAATTATTACCCTGTCGGTTAAGAGTTCAGACACGATAATCGATGTGAAGAAGAAAATTTTTGAGATGGAAGGAATACCAGTGCACCAGCAAATGTTGATGTTCAAGGGTAACCATCTAAATGACCACATGACTCTTGCCGATTACAACATCCAAGAGAAGTCAACCCTCAACCAGTACCCTGATCAGTACACCCTCGACCTCATGGCCCGCATGATGACAGACTAG 285 0.4421 MSSSGIFFTTMQIFVRSRRGIITLSVKSSDTIIDVKKKIFEMEGIPVHQQMLMFKGNHLNDHMTLADYNIQEKSTLNQYPDQYTLDLMARMMTD 94
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03972 94 ProSitePatterns Ubiquitin domain signature. 36 61 IPR019954 -
Trre10g03972 94 FunFam 2'-5'-oligoadenylate synthase-like protein 2 11 78 - -
Trre10g03972 94 SUPERFAMILY Ubiquitin-like 9 77 IPR029071 -
Trre10g03972 94 Gene3D - 8 91 - -
Trre10g03972 94 PRINTS Ubiquitin signature 20 40 IPR019956 -
Trre10g03972 94 PRINTS Ubiquitin signature 41 61 IPR019956 -
Trre10g03972 94 PRINTS Ubiquitin signature 62 83 IPR019956 -
Trre10g03972 94 Pfam Ubiquitin family 13 78 IPR000626 GO:0005515
Trre10g03972 94 ProSiteProfiles Ubiquitin domain profile. 11 76 IPR000626 GO:0005515
Trre10g03972 94 PANTHER UBIQUITIN 11 77 - -
Trre10g03972 94 SMART ubq_7 11 81 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03972 Trre-Chr10 48967168 48968221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03972 11 77 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 60.294 1.52e-19 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03972 - K08770 cmt:CCM_05063 78.5666