Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03971 ATGGGTAACAAGAATAGCTCCGTTTCTGTGCTTATTTCCGACCCACAAGTGTTCAATTGCTACAACTGTTCTCAAACCTTCGTCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTATTCTGCAATTGGGAACAAGTGTTACAAGTGCTGCTCATTGCTTTTTAAATGTTGTAAAGCCATTGAGAATATGTTGCAATCAATGAAACAGTCATGTCCCAATGAAAAACATGGTTGCAGGGAGCTTTTAAGTTACCTTGGAAAGAAGAAACATGAAGAATACATCCATGAGCCATGTTGGTGCCCCCTTTTAGGTTGTGACTTTGTTGCATCTTCAAAAGTGTTGTCTAACCATTTCAGCCATAAACACAGGGATTCTCAAATCAAATTTTCTTATGGTGACCTCTTTGTTGTCTCCTTGAAGTCTGCTGATAAAACCATTGTTCTTCATGAGGAAAATGATGGCAAACTATTTATTCTCAATAATAGTACTACGCTTTTGGGGAATACAGTCAATATTTGTTGCATTGGTCCTAATTCTTCCGAGTTCGATAGTTATTATATATTTACTAGGTCTCAAATATCCAAATTGAAATTTGAGTCTTTGGCAAAGAACATCCAACATATTACTTTAGCAACTCTTTCATCAGAGTTCCTTGTGATTCCAGTTGGTTCTTCCGAACCTCTCAAACTAGAAATTTGCATAACCCCCCACAAGATTCAAATATTCATAAAGGGCTTGGATAATTGGTGGCACGACCTCGAGGTTAAGAGTTCAGACACGATAGGCAATGTGAAGGAGAAGATTATTGACAAGCTTCGCATAAAGATCCCAGTGCACCAGCTATATCTGCTCTTTCAAAGTAAGGCACTAGATGACAGATTGACCATTGCTAATTACAACATCCAAGAGCACTCAAACCTCCACCTTCTCTGCCGCGTCATTGGGGACTAG 960 0.3896 MGNKNSSVSVLISDPQVFNCYNCSQTFVFQCDNGHIVCSTCYSAIGNKCYKCCSLLFKCCKAIENMLQSMKQSCPNEKHGCRELLSYLGKKKHEEYIHEPCWCPLLGCDFVASSKVLSNHFSHKHRDSQIKFSYGDLFVVSLKSADKTIVLHEENDGKLFILNNSTTLLGNTVNICCIGPNSSEFDSYYIFTRSQISKLKFESLAKNIQHITLATLSSEFLVIPVGSSEPLKLEICITPHKIQIFIKGLDNWWHDLEVKSSDTIGNVKEKIIDKLRIKIPVHQLYLLFQSKALDDRLTIANYNIQEHSNLHLLCRVIGD 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03971 319 SMART ubq_7 242 315 IPR000626 GO:0005515
Trre10g03971 319 Gene3D - 237 319 - -
Trre10g03971 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 4 238 IPR044286 -
Trre10g03971 319 SUPERFAMILY Ubiquitin-like 237 318 IPR029071 -
Trre10g03971 319 PRINTS Ubiquitin signature 252 272 IPR019956 -
Trre10g03971 319 PRINTS Ubiquitin signature 296 317 IPR019956 -
Trre10g03971 319 ProSiteProfiles Ubiquitin domain profile. 242 319 IPR000626 GO:0005515
Trre10g03971 319 ProSiteProfiles Zinc finger SIAH-type profile. 69 126 IPR013010 GO:0008270
Trre10g03971 319 Pfam Ubiquitin family 244 315 IPR000626 GO:0005515
Trre10g03971 319 SUPERFAMILY TRAF domain-like 73 237 - -
Trre10g03971 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 121 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03971 Trre-Chr10 48962483 48964169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03971 242 318 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 51.948 1.84e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03971 K04506 - mtr:11432566 341.658