Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03970 ATGGAGCCATGCACCAAAGACAGTGAAGAGAACATTGATTCTGGAAAAGATGTTAATAAGAAGAATAGCCTCATTTCGGTTATGATTTCCAACCCACATGCATTTGACTGTTGCGCTTGTTTTCAACCCTTAACTATTCCGGTCTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCTGTCCTAATCTTGGGAACAAGTGTGACAAGTGCTCAAAACGCGTTAGCTTAAAACGTTGTATAGCCTTTGACAATCTATTGCAATATGTCAAAATGTCATGTTCAAATGAAAAATATGGTTGCAAGGAGACAATAAGTTACAGTGAGAAGCGGAAACATGAAGAAGAATGCATTTATGTGCCATGTTACTGCCCCCTTTCTGGTTGTGACTTTGTTGCCTCATCTGAAGTTTTATCCGACCATTTCAGCCATAAACATGGGCATTCTCGAATCTGCTTTTCATATGGTTCCTCCTTTGTTGTCTCCTTGAAGGCTAATGATGAAGTCATTGTTCTTCAAGAGAAAACTAATGGAAAATTGTTTGTTCTTAGTAATAGTAAAGTGCACTTGGGAAATGCAGTCAATATTAGCTGCATTGGTCCTAACTCTTCTAAGCCAAGGTTTCGTTATGATATATTGGCTAGGTCCCAGATAGGATGTTTGAAGTTACAATATATTACGAAGAATATCCAACGAAGTACTTTAGCAACTCCTTCATCCGAGTTCCTTTTGATTCCATATGGTGATTTTGAACCTCTCAAGCTAGAAGTTTGCATTACTACCAAGATAAAAATCATCACAAGGAGAAAGAGCGGAAATAAGACCGACCTCTGGGTGGAGATTTCAGACACAATAGCCGATTTGAAGGAAAAGTTTATGAAAATGGAAGGGATCCCAGTGAACCAACAACGTTTGATCTTTGGCAAGAAGCAACTAGATGATGACCGCACCATTGCCGATTACACAATCCAAGATAACTCAATCATCTACTTGACCTCCCGCTAG 1008 0.3919 MEPCTKDSEENIDSGKDVNKKNSLISVMISNPHAFDCCACFQPLTIPVFQCDNGHIVCSTCCPNLGNKCDKCSKRVSLKRCIAFDNLLQYVKMSCSNEKYGCKETISYSEKRKHEEECIYVPCYCPLSGCDFVASSEVLSDHFSHKHGHSRICFSYGSSFVVSLKANDEVIVLQEKTNGKLFVLSNSKVHLGNAVNISCIGPNSSKPRFRYDILARSQIGCLKLQYITKNIQRSTLATPSSEFLLIPYGDFEPLKLEVCITTKIKIITRRKSGNKTDLWVEISDTIADLKEKFMKMEGIPVNQQRLIFGKKQLDDDRTIADYTIQDNSIIYLTSR 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03970 335 ProSiteProfiles Ubiquitin domain profile. 264 335 IPR000626 GO:0005515
Trre10g03970 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 143 IPR013083 -
Trre10g03970 335 PRINTS Ubiquitin signature 295 315 IPR019956 -
Trre10g03970 335 PRINTS Ubiquitin signature 316 335 IPR019956 -
Trre10g03970 335 PRINTS Ubiquitin signature 274 294 IPR019956 -
Trre10g03970 335 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 15 261 IPR044286 -
Trre10g03970 335 SMART ubq_7 264 335 IPR000626 GO:0005515
Trre10g03970 335 SUPERFAMILY TRAF domain-like 92 261 - -
Trre10g03970 335 ProSiteProfiles Zinc finger SIAH-type profile. 90 148 IPR013010 GO:0008270
Trre10g03970 335 Pfam Ubiquitin family 271 332 IPR000626 GO:0005515
Trre10g03970 335 Gene3D - 250 335 - -
Trre10g03970 335 CDD RING-HC_SIAHs 35 73 - -
Trre10g03970 335 SUPERFAMILY Ubiquitin-like 250 333 IPR029071 -
Trre10g03970 335 Pfam Seven in absentia protein family 80 235 IPR018121 GO:0005737|GO:0006511|GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03970 Trre-Chr10 48955681 48957419 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03970 35 258 C3H Transcription Factor Family AT2G41980 25.306 4.12e-15 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03970 K04506 - mtr:11432566 426.017