Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03969 ATGAGTAAACCCGTTATTTCCAACCCAACAATGCTCGATTGCTGCAACTGTTCTCAAATCTTAAGTATTCCAATCTTTCAGTGTGATAATGGTCATCTTGTTTGCTCTACCTGCTGTTCCGAATTTTGGAATATTTGTCACAAGTGCTCAAAACGCTTAAACCGTTGTATAGCTTTTGAGAATTTGTTGCAATCTCTCGAAATACCATGTCCGAATGAAAAATTTGGTTGCAGAGCGACACTAAGTTATAGCGGAAACAAGAATCATGAAGAATGCATCTATGTGCCATGTTACTGTCCCCTTTCAGGTTGTGACTTTGTTGCTTCATCTGAAGTTTTATCCAACCATTTCAGCCGTGAACACGAGGATTCTCGAATACTCTTTTCATATGGATACTCCTTCAATGTCTCGTTCAAGTTTGATGATGAAGCCATTGTTCTTCAAGAGAAAAATGATGGAAAACTGTTTATTCTTAATAATAATAATAGTAATGTGAGTATGGCAAATGCAATCAATATTAGCTGTGTTGGTCCTAATTCTTCTGAGGCAGGGTACCATTATGATATATTGGCCAAGTCCCAAGTAGGCAAGATGAAGTTACAATCTGTTACGAAGAATATTCAACAAAGTACTTTACCACCTCCTTCGTCTGAGTTCCTTACGATTCCATTTGGTTATTTTGAACCTCTCGAGCCAAAAATTTGCATAACCTTCAAGATGCAAATATTCTTATCGACCGGAGACGGAAAGATGATTCTCCTGTGGGTTAAGAGCTCAGACACAATAATCAATGTGAAGAAGAAAATTCAAGACCAGGAAGGAATGCCAGTGCACCAGCAAACTTTGAAGTTTGCTGGTAAGTTTCTATCTGACGACATGACCCTTGACGATTACAACATCAAAGAGAAGTCAACCCTTAACCTCCTCGTCCGCATGTTGTTTGACTAG 948 0.3871 MSKPVISNPTMLDCCNCSQILSIPIFQCDNGHLVCSTCCSEFWNICHKCSKRLNRCIAFENLLQSLEIPCPNEKFGCRATLSYSGNKNHEECIYVPCYCPLSGCDFVASSEVLSNHFSREHEDSRILFSYGYSFNVSFKFDDEAIVLQEKNDGKLFILNNNNSNVSMANAINISCVGPNSSEAGYHYDILAKSQVGKMKLQSVTKNIQQSTLPPPSSEFLTIPFGYFEPLEPKICITFKMQIFLSTGDGKMILLWVKSSDTIINVKKKIQDQEGMPVHQQTLKFAGKFLSDDMTLDDYNIKEKSTLNLLVRMLFD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03969 315 ProSiteProfiles Zinc finger SIAH-type profile. 65 122 IPR013010 GO:0008270
Trre10g03969 315 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 236 IPR044286 -
Trre10g03969 315 PRINTS Ubiquitin signature 250 270 IPR019956 -
Trre10g03969 315 PRINTS Ubiquitin signature 271 291 IPR019956 -
Trre10g03969 315 PRINTS Ubiquitin signature 292 313 IPR019956 -
Trre10g03969 315 Gene3D - 236 314 - -
Trre10g03969 315 ProSiteProfiles Ubiquitin domain profile. 240 312 IPR000626 GO:0005515
Trre10g03969 315 SMART ubq_7 240 311 IPR000626 GO:0005515
Trre10g03969 315 FunFam 2'-5'-oligoadenylate synthase-like protein 2 239 311 - -
Trre10g03969 315 Pfam Seven in absentia protein family 55 210 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03969 315 SUPERFAMILY Ubiquitin-like 233 312 IPR029071 -
Trre10g03969 315 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 117 IPR013083 -
Trre10g03969 315 Pfam Ubiquitin family 242 312 IPR000626 GO:0005515
Trre10g03969 315 SUPERFAMILY TRAF domain-like 65 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03969 Trre-Chr10 48948683 48950607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03969 240 312 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 61.644 1.59e-21 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03969 K04506 - mtr:11432566 372.089