Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03968 ATGGTTTTCTTTTATGTTGCTATTCAGTGTGATAATGGTCATCTTGTTTGCTCTACCTGTTGTTCCGAATTTTCGAATATGTGTCACGAGTGCTCAAAACGCATTACCTTAACACGTTGTATAGCCTTTGAGAATTTGTTGCAATCTCTTGAAAGACCATGTCCGAATGAAAAATATGGTTGCAGAGAGACAATAAGTTATAGCGGAAAGAAGAATCATGAAGAATGCATCTATGTGCCATGTTATTGCCCTCTTCCAGGTTGTGACTTTGTTGCTTCATCTGAAGTGTTATCCAACCATGTCAGCTGTAAGCATGAGGATTCTCGATTCCTCTTTGTGTATGGAAACTCCTTCGATGTCTCCCTCAAGTTTGATGACGAAGCCATTGTTCTTCAAGAGGAAAATGATGGAAAACTGTATATTCTTACTATTAATAGTAATCTTATGGGAAATGCAATCAATATTAGCTGCATTGGTCCTAATTCTTCTGAGCCAGGGCATTATTATGATATATTGGCCAAGTCCCAAGCAAGCAAGATGAAGTTACAATCTGTTACAAAGAATATTCAACAAAGTACTTTAACACTTCCTTCATCTGAGTTCCTTGTGATTCCATTTGGTTTTTTTGAATCTCTCGAGCCAAAAATTTGCATAACCTTCAAGATGCAAATCTACGTAAATAATATGGATGGAAAGATGATCCCCCTGAGGGTAAAGAATTCAGACACGATAGTCAATGTGAAGGAGAAGATTCTTGAACAGGATGGGATGCCAGTGCACCAACAAAATCTGTTATTTTCTGGTCTATCACTTGCGGATAACCTGACACTTGCTGATTACAACATTCAAGAGAAGTCAACCCTCGACCTTATGCTCCGCCTAATTGGGGACTAG 894 0.3859 MVFFYVAIQCDNGHLVCSTCCSEFSNMCHECSKRITLTRCIAFENLLQSLERPCPNEKYGCRETISYSGKKNHEECIYVPCYCPLPGCDFVASSEVLSNHVSCKHEDSRFLFVYGNSFDVSLKFDDEAIVLQEENDGKLYILTINSNLMGNAINISCIGPNSSEPGHYYDILAKSQASKMKLQSVTKNIQQSTLTLPSSEFLVIPFGFFESLEPKICITFKMQIYVNNMDGKMIPLRVKNSDTIVNVKEKILEQDGMPVHQQNLLFSGLSLADNLTLADYNIQEKSTLDLMLRLIGD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03968 297 ProSiteProfiles Zinc finger SIAH-type profile. 49 106 IPR013010 GO:0008270
Trre10g03968 297 ProSitePatterns Ubiquitin domain signature. 248 273 IPR019954 -
Trre10g03968 297 PRINTS Ubiquitin signature 274 295 IPR019956 -
Trre10g03968 297 PRINTS Ubiquitin signature 232 252 IPR019956 -
Trre10g03968 297 PRINTS Ubiquitin signature 253 273 IPR019956 -
Trre10g03968 297 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 45 101 IPR013083 -
Trre10g03968 297 Pfam Ubiquitin family 224 294 IPR000626 GO:0005515
Trre10g03968 297 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 8 218 IPR044286 -
Trre10g03968 297 FunFam 2'-5'-oligoadenylate synthase-like protein 2 221 294 - -
Trre10g03968 297 Gene3D - 218 297 - -
Trre10g03968 297 SMART ubq_7 222 293 IPR000626 GO:0005515
Trre10g03968 297 ProSiteProfiles Ubiquitin domain profile. 222 297 IPR000626 GO:0005515
Trre10g03968 297 Pfam Seven in absentia protein family 39 204 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03968 297 SUPERFAMILY TRAF domain-like 50 208 - -
Trre10g03968 297 SUPERFAMILY Ubiquitin-like 218 296 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03968 Trre-Chr10 48941908 48943665 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03968 222 296 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 57.333 7.70e-22 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03968 K04506 - mtr:11432566 355.14