Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03967 ATGGAACCTTTTATTATTTCCAACCCTAGTTTGCTGGATTGTTGCAATTGTTTTCAATCCTTAACTGTTCCCGTCTTTCAGTGCGATAATGGTCATATTGTTTGCTCTACATGCTGTCCTAAACTTAGGAACAAGTGTCAGAAGTGCTCATTGAGCATTAGCTCAAAACGGTGTACAGCCATTGAGAATCTATTGCAATCTATCAAAATATCATGTCCAAATGCAAAACTTGGTTGCATAGAGAAAATAAGTTACACTAGAAAGAGGAAGCATGAAGAAGAATGTATCTATGAGCAATGTTACTGCCCTATTTCAGGTTGTGGCTTTTTTGCTTCATTAGAAGTGTTGTCCAACCATTTCAGCCGGAAACACAAGGACTCTCAAATTAAATTTTCTTGCGGTCGTTCCTTTATCGTCCCGTTAAAGTCTACTGATGAAACCATTGTTCTTCAAGAAGAAAACGATGGCAAACTATTCATTCTAAATCATAGTATTATGACTTTGGGGAATGTAGTCAATATTTGCTGCATTGGTCCGAATAATTTAGAGTCCGAGTATAGTTATGATATATTGGTTAAATCTGATATAGGCAAATTGAAATTACAATCTTTTGTGAAGAATGTCCGACGATTTACTTTAGGAACTATTTCATCAGGGTCCCTTGTGATTCCAGTTGGTTCTTCTTCTGAATCTCTCAAGCTGGAAATTTGCATAACATCCCTCATGATTCAAATTTACGCAAGGGACTTGAGAGGACGACTGATCCCATTGAAAGTTAAGAGTTCAGATACGATAATCAATGTGAAGAAGAAGATTCAGGAAAAGGAAGGGATCCCAGTGGAGCAACAACGTCTGATACTTGGTAATCATCTATTAGATGACAACCTGACCCTTGCCAATTACAACATTCAAGAGAAGTCAATCATCCACCTTGTCATTCGCTTGACTGGGAGCTAG 957 0.3783 MEPFIISNPSLLDCCNCFQSLTVPVFQCDNGHIVCSTCCPKLRNKCQKCSLSISSKRCTAIENLLQSIKISCPNAKLGCIEKISYTRKRKHEEECIYEQCYCPISGCGFFASLEVLSNHFSRKHKDSQIKFSCGRSFIVPLKSTDETIVLQEENDGKLFILNHSIMTLGNVVNICCIGPNNLESEYSYDILVKSDIGKLKLQSFVKNVRRFTLGTISSGSLVIPVGSSSESLKLEICITSLMIQIYARDLRGRLIPLKVKSSDTIINVKKKIQEKEGIPVEQQRLILGNHLLDDNLTLANYNIQEKSIIHLVIRLTGS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03967 318 CDD RING-HC_SIAHs 12 50 - -
Trre10g03967 318 Pfam Seven in absentia protein family 57 210 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03967 318 Gene3D - 239 318 - -
Trre10g03967 318 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 4 240 IPR044286 -
Trre10g03967 318 Pfam Ubiquitin family 250 315 IPR000626 GO:0005515
Trre10g03967 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Trre10g03967 318 SMART ubq_7 243 314 IPR000626 GO:0005515
Trre10g03967 318 SUPERFAMILY Ubiquitin-like 235 317 IPR029071 -
Trre10g03967 318 ProSiteProfiles Ubiquitin domain profile. 243 318 IPR000626 GO:0005515
Trre10g03967 318 PRINTS Ubiquitin signature 274 294 IPR019956 -
Trre10g03967 318 PRINTS Ubiquitin signature 253 273 IPR019956 -
Trre10g03967 318 PRINTS Ubiquitin signature 295 316 IPR019956 -
Trre10g03967 318 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
Trre10g03967 318 SUPERFAMILY TRAF domain-like 67 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03967 Trre-Chr10 48932857 48934573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03967 243 318 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 57.895 2.79e-23 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03967 K04506 - mtr:11432566 384.415