Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03966 ATGGGAGATTATACCTCAAAAGTTGTTAACTCTGATTCTTGGATGATTTCCGACCCTCGTGTATTTGATTGCTGCAATTGTTTGGAATTCTTGACTACCCCTATCTTTGAGTGTGATAATGGTCATATTTTCTGCTCTACTTGCCATTCTAAGTTTGGGAACAAGTGTCAAAAATGCTCTATGGACATTACCTTAAAACGCTCAAGAGCAGTTGAGAATCTATTGCAATCTATCAAATTCTCATGCATGAATGAAAAACATGGGTGCAAAGAGAGAATCAATTACAATAGAATGAAGAAGCATGAAGAAGAATGTCTCTATGTGCCATGTTACTGTCCCCTTTTAGGTTGTAAATTTGTTGCCTCATCTGAAGTGTTATCCAACCATTTCAGGCAAAAGCACGCGGATTCTCGAATCCCATTTTTATACGATAGCCCGTTTTTTGTTACCTTGAAATCTAATGAAGGAGCCATTATACTTCAAGAGCAAAATGTTGGGAAACTATTTGTCCTCAACAATAGTAATTTGACCGTTGGAAATGCCGTTAATATTTGTTGCATTGGTCCTAACTCTTTTGAGTCGAAACATAGTTATGATATATTAGCTAAGTCTCCGACATGCAAACTGAAGTTACAATCTTTTGTGAAGAATGTCCAACAATTTACCTTTAAAGCTCCTTCGTTGGAGTTCCTTGTGATTTCATTTGGTTATTCTGAACCTCAAAAGCTAAGAATTTGCATAACTACCTATATGATGCAGATCAACCTATTAAGATCGAGTAGTAGGAGATTCCCATTGACGGTCAAGAGTTCAGACACAATAATCGATGTGAAGAAGAAGATTCATGAAGAGGAAGGCGACCCAGTGCAGGATCAACGTCTAATCTTTGAGGGTAGGGAGCTAGATGACAAGAAGACCCTTGCCAATTACAACATCCTAGAGAACACAACCATCCACTTGATCCGTCGTATGCAAGGGAGCTAG 984 0.3841 MGDYTSKVVNSDSWMISDPRVFDCCNCLEFLTTPIFECDNGHIFCSTCHSKFGNKCQKCSMDITLKRSRAVENLLQSIKFSCMNEKHGCKERINYNRMKKHEEECLYVPCYCPLLGCKFVASSEVLSNHFRQKHADSRIPFLYDSPFFVTLKSNEGAIILQEQNVGKLFVLNNSNLTVGNAVNICCIGPNSFESKHSYDILAKSPTCKLKLQSFVKNVQQFTFKAPSLEFLVISFGYSEPQKLRICITTYMMQINLLRSSSRRFPLTVKSSDTIIDVKKKIHEEEGDPVQDQRLIFEGRELDDKKTLANYNILENTTIHLIRRMQGS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03966 327 Gene3D - 244 327 - -
Trre10g03966 327 Pfam Ubiquitin family 259 324 IPR000626 GO:0005515
Trre10g03966 327 ProSiteProfiles Zinc finger SIAH-type profile. 77 135 IPR013010 GO:0008270
Trre10g03966 327 FunFam 2'-5'-oligoadenylate synthase-like protein 2 252 324 - -
Trre10g03966 327 SUPERFAMILY TRAF domain-like 77 233 - -
Trre10g03966 327 Pfam Seven in absentia protein family 68 216 IPR018121 GO:0005737|GO:0006511|GO:0007275
Trre10g03966 327 PRINTS Ubiquitin signature 304 325 IPR019956 -
Trre10g03966 327 PRINTS Ubiquitin signature 283 303 IPR019956 -
Trre10g03966 327 PRINTS Ubiquitin signature 262 282 IPR019956 -
Trre10g03966 327 CDD RING-HC_SIAHs 22 60 - -
Trre10g03966 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 130 IPR013083 -
Trre10g03966 327 ProSiteProfiles Ubiquitin domain profile. 252 327 IPR000626 GO:0005515
Trre10g03966 327 SUPERFAMILY Ubiquitin-like 250 326 IPR029071 -
Trre10g03966 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 11 249 IPR044286 -
Trre10g03966 327 SMART ubq_7 252 323 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03966 Trre-Chr10 48930030 48931656 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03966 252 327 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 47.368 3.37e-17 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03966 K04506 - mtr:11432566 357.451