LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03964	ATGGACATCCCTGACGGCGTTAGCATCAAGGTTAACGCCAAGGTGATCGAAGTTGAAGGTCCTCGCGGCAAGCTTGTTCGTGATTTCAAGCATCTCAACCTTGATTTTGATCTCATCACCGATGAGAATGGAAAGAAGAAGCTGAAGATCGATGCTTGGTTTGCTTCCCGGAAAATCTCTGCCGCCATCCGAACTGCTCTCAGTCAGATTGAGAATCTCATCAGAGGTGTTACCAAGGGATTTCGCTACAAGATGAGGGTTGATCATGCTGCTGAAGGTGTAGATGATGGTGCCGAAGGTGTGAACGACGAAAATCCTCCGGTTGACAGAGATGACAATAATGAAGATCCTCCGGTTGACGAGGAAAATGTTGCTGAAGATGTCGCTGAAGATGAAGATGGTGATGGTGATGATGATGGACAGGCACCTGTGGTTCCTGAAGAGGGTTATGGAGGGGGTCCGACCGATTTGTCTCTATTGCATGAGTACCATAAGCATAGAGCAGCACAAATATGGGAAGCGACGAGCAGTGAAGCGCCGATTTTGAAGAAAGTGATGCGCTCTGTAGCAAACGGGAAGAAGGTGATTAATCTTCCGAAGCTTCCGCGGACTAGAGAGAACGACTGGTTTTGGAAGGCTATTGAGGCATTGCATAAAATACACATTATTACATACACCACCACACCAGATCACAGCATTCCGTTAACACCACAAGGCATCCAACAAGCCCGTCTCGCCGGCGATAATCTCTGCCGTGTCGTTTCCGGCGAAGTTGAATCCGCCGCTGATGTTTTCGATCGTATTTCCGGGTTTTTTGAATCGTTGTGGAGAGACATTGATTTGAATCGTCGTGGCGGCGAAATCCTGCTTCCGATTCCGTTTCTGCTTCCTTTTTGTTGA	900	0.4789	MDIPDGVSIKVNAKVIEVEGPRGKLVRDFKHLNLDFDLITDENGKKKLKIDAWFASRKISAAIRTALSQIENLIRGVTKGFRYKMRVDHAAEGVDDGAEGVNDENPPVDRDDNNEDPPVDEENVAEDVAEDEDGDGDDDGQAPVVPEEGYGGGPTDLSLLHEYHKHRAAQIWEATSSEAPILKKVMRSVANGKKVINLPKLPRTRENDWFWKAIEALHKIHIITYTTTPDHSIPLTPQGIQQARLAGDNLCRVVSGEVESAADVFDRISGFFESLWRDIDLNRRGGEILLPIPFLLPFC	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03964	299	SUPERFAMILY	Ribosomal protein L6	2	80	IPR036789	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Trre10g03964	299	PANTHER	60S/50S RIBOSOMAL PROTEIN L6/L9	1	87	IPR000702	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Trre10g03964	299	Pfam	Ribosomal protein L6	3	80	IPR020040	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843
	Trre10g03964	299	FunFam	60S ribosomal protein L9	1	80	-	-
	Trre10g03964	299	MobiDBLite	consensus disorder prediction	114	142	-	-
	Trre10g03964	299	MobiDBLite	consensus disorder prediction	93	153	-	-
	Trre10g03964	299	Gene3D	-	1	82	IPR036789	GO:0003735\|GO:0005840\|GO:0006412\|GO:0019843

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03964	Trre-Chr10	48915380	48920475	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03964	1	90	Cytoplasmic Ribosomal Protein Gene Family	AT1G33140	78.022	1.60e-43	145

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03964	K02940		-	gmx:100306058	155.992