Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03963 ATGGAGCATGAAGAAGGAAGCTTTGAAAGCTTCTTAACATGGACATCATCACACTTAGGAATATCAGATTCAACAACAACAACAACTACCAATCAATCTCATCACTCTTTGGGTCATTCTTTATGCGTTTCTATCTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTTAGAGATCTTAAGAAAGGAGAACTTATTCTAAGAGTTCCAAAATCTGCTTTATTGACTAGTGAGAGTGTTATGCAAGATAAAAAACTTTGTCTTGCTGTTAATAGACACTCTTCTCTTTCCTCAGTTCAGATATTGACTGTTTGCTTGTTATACGAAGTTGGTAAAGGAAAAACTTCAAGGTGGCATCCTTACCTCGTGCATTTGCCACAAAGTTACGACCTGCTAGCCATGTTTGGTGAATTTGAGAAACAAGCTCTGCAAGTGGATGAAGCAATGTGGGTCACAGAAAAAGCTGTACAAAAAGCCAAATCAGAATGGAAAGAAGCTCTTGCCTTGATGGAAGATCTCATGTTTAAGCCTCAACTTCTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACGATATCTTCCCGGACATTGCATATACCATGGGATGAAGCTGGTTGTTTATGCCCTATTGGTGACTTGTTTAATTATGACGCACCTGGAGAGGAGCTGTCTGGTATTGAGAATATAATCGCCTCATCAAATGTAGATGAAGAGCAGATTGATTTTCATTCTCAGAGACTAACTGATGGTGGTTTTGAGGAAGATTCTAATGCATATTGCTTTTATGCTAGGACAAATTACAAGAAAGGCGATCAGGTTCTATTATGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTACAAAAAAATCCAAATGACAAAATTTTCATCCCTTTGGAACCTGCTATGTACACTTCTACTTCATGGTCTAAGGAATCACTCTATATTCATCATGACGGGAAGCCTTCATTTGCGCTATTAGCTGCGTTACGATTGTGGGCAACCCCTCATAATAAGAGGAGGTCTGTCGGACATCTTGCATATTCCGGTTCTCAACTGTCTGCCGACAATGAAATTATCATTATGAAATGGTTGTCGAAAGCTTGTGACACTGTCTTAAAGAATATGCCGACATCTATTGAAGACGATACCTTACTCATGAATCCATTGGATAGTACTATTAGTCAAGACTTTATAACTTTCATGAAGATTGCAAAACTCATGTCTTCTAGGAATGAAGTCTATACTTTCTTAGAAGCTCATAATATATCGGACGCGCTTAGTTTTAGCGAGATGATTTTATCTAAAAAAGTGAGAAGTTCAATGGAGAGATGGAAATTAGCTGTCCTATGGAGGCTCAGGTATAAGAAAATCCTCGTTGATTGCATCTCTTATTGCAATAGAGTATTAGATTCTTTAATGAGATAA 1446 0.3838 MEHEEGSFESFLTWTSSHLGISDSTTTTTTNQSHHSLGHSLCVSIFPHSGGRGLGAVRDLKKGELILRVPKSALLTSESVMQDKKLCLAVNRHSSLSSVQILTVCLLYEVGKGKTSRWHPYLVHLPQSYDLLAMFGEFEKQALQVDEAMWVTEKAVQKAKSEWKEALALMEDLMFKPQLLTFKAWVWAAATISSRTLHIPWDEAGCLCPIGDLFNYDAPGEELSGIENIIASSNVDEEQIDFHSQRLTDGGFEEDSNAYCFYARTNYKKGDQVLLCYGTYTNLELLEHYGFLLQKNPNDKIFIPLEPAMYTSTSWSKESLYIHHDGKPSFALLAALRLWATPHNKRRSVGHLAYSGSQLSADNEIIIMKWLSKACDTVLKNMPTSIEDDTLLMNPLDSTISQDFITFMKIAKLMSSRNEVYTFLEAHNISDALSFSEMILSKKVRSSMERWKLAVLWRLRYKKILVDCISYCNRVLDSLMR 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03963 481 SUPERFAMILY SET domain 37 296 IPR046341 -
Trre10g03963 481 CDD SET_LSMT 50 292 - -
Trre10g03963 481 ProSiteProfiles SET domain profile. 39 278 IPR001214 GO:0005515
Trre10g03963 481 Pfam SET domain 51 278 IPR001214 GO:0005515
Trre10g03963 481 Pfam Rubisco LSMT substrate-binding 326 465 IPR015353 -
Trre10g03963 481 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 415 - -
Trre10g03963 481 Gene3D set domain protein methyltransferase, domain 1 5 292 - -
Trre10g03963 481 Gene3D - 306 481 IPR036464 -
Trre10g03963 481 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 288 400 IPR036464 -
Trre10g03963 481 FunFam Protein SET DOMAIN GROUP 40 8 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03963 Trre-Chr10 48909878 48913910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03963 51 249 NAC Transcription Factor Family AT3G56570 26.923 8.43e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre10g03963 SET 4.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03963 - - tpra:123923746 899.427