Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03931 ATGGAAAACCATGAGGATCCTGTTGATGTGGATGTTGAGTCCATAAATTCCACTGAACCTGATAATGTTGATATTGAATCGGATGATGATGAGAGTGAATCGGGGTCTAATGCGGATCAAAATATGAAGGATGGAGATGCAGCTGCAGGTCATAGTGAGGTAAATTTTGATTCATTAACTGCCGATGACATTCGTTCTATGGAATTTTCTAATTTAAGTGAAGCTTATGACTTTTATTACCGCTATGGTAAACATCATGGTTTTCCTATTAGGAAAAGTGATAGTAGGAAAAGCAAATGTAAAACTAAAATAGTAATGAAGCAGTACGTATGCAACAAAGCTGGTTTAAGAGACAAGAAACACTTAGTTAGGTTAGATAGGAAAATAGAACATAGACGTTTGAGCCGTACTGACTGTGAAGCTAGGTTTCGTGTGAAATACCATGCTGCAAAGGGTAAATTTGTAGTAGCAAGGTTTGAAGAGGCTCACAACCATGAATTAACCCCAGCTAGGTTTGTTCACTTGCACCCATTGTTTCGCAAAATCACTGAGGCTGATAAGGCACAAATTGATGGTCTTCAGAACCATGGTATTAGAACATGTCATATTATGGGGTACATGGTTGCGCAGAAGGGTGGATATGCTGATGTTGGGTTTACAAAGAAAGATTTGTACAACTATTTTGATAAAAAAATGCGTGCTGTTATTAAAGACGGTGATGTTGCCGCTGCTTTAAATTATTTAAATGTTAAGACGGCTACAGATCCGTTGCTATTTGCTGAGTATGATGTCGACAACAGTGATGGAAGAATGAAAACACTATTTTGGGCTGATGGGCATAGTAGGACTGATTTTTTCTGTTTTGGTGATGTGCTTGCATTTGACACGACGTACAAGAAGAACAAATACAACTATCCATTGGTTGTGTTTTCAGGGTGTAACCACCACTCGCAGACAGTAATATTTGGTGCTGCATTGGTATCTGATGAAACCACGGAGACGTATAAGTGGGTGTTGACTAAATTCTTAAATTGCATGGAAGGTAAACAACCACAGGCAGTTATAACAGATGGAGATGGGGCAATGAGGGAAGCTATAAAACAGGTATTTCCCGATGCGACCCATAGGTTATGTGCTTGGCATTTGAATAGGAATGTGGGGGAGAATGTGAAGAAGCCAGAATTTGGCGAAGCTTTTACAAAGGCGATGTACTCAAATTTTACAAGAGATGAATTTGAAGAGTACTGGTCACAGATGATTAAAGGACATGGATTGGAAGGAAATTCATGGGTTCTCAAAACGTACGATAATAGGTCAATGTGGGCAACTGCATATCTACGTGATCAGTTTTTCGGACGTTTAAGAACGACTTCTCAATGTGAAGCGGTGAATTCAATTATCAAGACTTATGTGAGAAAGAAAGGATGCATCTTTGAATTTATGCACAACTATGATGAGGCACTGAGTGGTTATAGAAATAATGAATTGGTTGCTGATTTTAAATCATCATGTACCGATCCTGTGTTGACAACGCAACTTCGTAAGATTGAGAGCGATGCCGCTAAAATATATACAGCGGAACTTTTCATAGAAATTAGAGATGAGATTCTGAAGGCCGGCGAATTGATAGTTAGGGAAAAAACTGAGGTCGGGGCTACGAAGATTTATAAGTTAACTAAATATTGTAGGGATGATTATGAAAAAAATGTTGTTTATAATGGTTCGACATTCGAATGTTCATGTAAGTTGTTTGATTCTCGTGGCATTCCATGTTCGCATGTATTTTATGTCATGAAAGAGGAACATGTTGATCATATTCCAAGCAATTTGGTTTTGTCGCGATGGACCAAGGATGCCAAAATTGCTTATTTGAACACTGTGAATTGTAATGATAAGGTTGATTCGAGCATGGTTGAGCAAGCCCGTTTTGCATCATATTGTTCGGTTTTAACAGATTTTAGCAAAGAAGCTTCAAAAAAGGATGGTGTTTATGGCCAAATAATGGAAGACCTGATGAAGTTAAAAAGAAAGTATTGCAGTAAAGATGACCCTGCTATTGGGACACAAAAATCAGCAGTAGGTGATCCATTGCTGGCGAAGAATAAAGGTGCTCCGAAGAAGCCAAAAAAGAACGAAACTAAAACTGCCAGGCGGCGTTCAAACCGTACAAACAAAACTGACGATGGGAGGAGATCTTCGGGTACACAACAAACCAAAGAACAATCGGGAAAAGCAAATATTCATGTGGACTCCATGTCGATATCAGATTCTGTAAGCCTAATTGCTGAGAGAAAAACAAGTGGCAATGGTGAAACAAGTGTGCAGAACAATCGTTCACGTGGCGCTAATGTCGCAACAACAGCCGCTAATGTCGCAACAACAGCACCTATGGAATTGACAACCACAAGCAGAATGTTCAATCAAATGTATGGACTTCAACCTGTGATGCCTATGGTAAATCCGATGATTCAACCGATGCATCTACCGCCCTTGTACCCAATGTATGGACTGCAACATGGAATGAGTGCTGGTCAAAATTCAAATTCCCACTATGGTCTGCTACAGCAAGTTATGAAAACTGCTAGGAATGATTGA 2595 0.3938 MENHEDPVDVDVESINSTEPDNVDIESDDDESESGSNADQNMKDGDAAAGHSEVNFDSLTADDIRSMEFSNLSEAYDFYYRYGKHHGFPIRKSDSRKSKCKTKIVMKQYVCNKAGLRDKKHLVRLDRKIEHRRLSRTDCEARFRVKYHAAKGKFVVARFEEAHNHELTPARFVHLHPLFRKITEADKAQIDGLQNHGIRTCHIMGYMVAQKGGYADVGFTKKDLYNYFDKKMRAVIKDGDVAAALNYLNVKTATDPLLFAEYDVDNSDGRMKTLFWADGHSRTDFFCFGDVLAFDTTYKKNKYNYPLVVFSGCNHHSQTVIFGAALVSDETTETYKWVLTKFLNCMEGKQPQAVITDGDGAMREAIKQVFPDATHRLCAWHLNRNVGENVKKPEFGEAFTKAMYSNFTRDEFEEYWSQMIKGHGLEGNSWVLKTYDNRSMWATAYLRDQFFGRLRTTSQCEAVNSIIKTYVRKKGCIFEFMHNYDEALSGYRNNELVADFKSSCTDPVLTTQLRKIESDAAKIYTAELFIEIRDEILKAGELIVREKTEVGATKIYKLTKYCRDDYEKNVVYNGSTFECSCKLFDSRGIPCSHVFYVMKEEHVDHIPSNLVLSRWTKDAKIAYLNTVNCNDKVDSSMVEQARFASYCSVLTDFSKEASKKDGVYGQIMEDLMKLKRKYCSKDDPAIGTQKSAVGDPLLAKNKGAPKKPKKNETKTARRRSNRTNKTDDGRRSSGTQQTKEQSGKANIHVDSMSISDSVSLIAERKTSGNGETSVQNNRSRGANVATTAANVATTAPMELTTTSRMFNQMYGLQPVMPMVNPMIQPMHLPPLYPMYGLQHGMSAGQNSNSHYGLLQQVMKTARND 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03931 864 SMART 26again6 577 604 IPR006564 GO:0008270
Trre10g03931 864 ProSiteProfiles Zinc finger SWIM-type profile. 566 602 IPR007527 GO:0008270
Trre10g03931 864 MobiDBLite consensus disorder prediction 1 49 - -
Trre10g03931 864 Pfam FAR1 DNA-binding domain 77 168 IPR004330 -
Trre10g03931 864 MobiDBLite consensus disorder prediction 735 750 - -
Trre10g03931 864 MobiDBLite consensus disorder prediction 717 734 - -
Trre10g03931 864 Pfam MULE transposase domain 291 385 IPR018289 -
Trre10g03931 864 PANTHER OS01G0519700 PROTEIN 63 717 - -
Trre10g03931 864 MobiDBLite consensus disorder prediction 689 750 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03931 Trre-Chr10 48666722 48669501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g03931 MULE 5.6e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03931 - - tpra:123922786 1155.2